Variant report

Variant	rs28510273
Chromosome Location	chr15:83660298-83660299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83655503..83657739-chr15:83659649..83661326,2	K562	blood:
2	chr15:83620995..83623285-chr15:83658339..83660401,2	MCF-7	breast:
3	chr15:83500530..83503230-chr15:83659180..83661791,2	K562	blood:
4	chr15:83653421..83657652-chr15:83658187..83664048,8	MCF-7	breast:
5	chr15:83658098..83660468-chr15:83666992..83669244,2	MCF-7	breast:
6	chr15:83659649..83661321-chr15:83668906..83670825,2	K562	blood:

Variant related genes	Relation type
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1037403	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11259963	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2046070	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2123157	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123158	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2167602	0.87[ASN][1000 genomes]
rs2381028	0.90[ASN][1000 genomes]
rs28451607	0.88[ASN][1000 genomes]
rs4842859	0.85[ASN][1000 genomes]
rs4842928	0.83[ASN][1000 genomes]
rs4842935	0.87[ASN][1000 genomes]
rs59108707	0.81[ASN][1000 genomes]
rs6603038	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6603041	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025253	0.89[ASN][1000 genomes]
rs8043020	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
2	chr15:83655800-83668200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:83655800-83668200	Weak transcription	Brain Angular Gyrus	brain
4	chr15:83655800-83673600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:83655800-83675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:83656000-83668600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:83656000-83669000	Weak transcription	Left Ventricle	heart
9	chr15:83656000-83669000	Weak transcription	Right Atrium	heart
10	chr15:83656000-83675200	Weak transcription	Esophagus	oesophagus
11	chr15:83656200-83660600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:83656200-83661000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:83656200-83664000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:83656200-83668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:83656200-83668600	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:83656200-83668600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:83656200-83668800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:83656200-83669000	Weak transcription	Colonic Mucosa	Colon
19	chr15:83656200-83669000	Weak transcription	HMEC	breast
20	chr15:83656200-83669000	Weak transcription	HSMMtube	muscle
21	chr15:83656200-83669000	Weak transcription	NHLF	lung
22	chr15:83656200-83673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
24	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
25	chr15:83656400-83660800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:83656400-83661200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:83656400-83668200	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:83656400-83668600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:83656400-83668800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:83656400-83669000	Weak transcription	Fetal Kidney	kidney
33	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
34	chr15:83656600-83661200	Weak transcription	Pancreas	Pancrea
35	chr15:83656600-83668400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:83656600-83668600	Weak transcription	Brain Substantia Nigra	brain
37	chr15:83656600-83668800	Weak transcription	GM12878-XiMat	blood
38	chr15:83656600-83669000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:83656600-83669000	Weak transcription	Thymus	Thymus
40	chr15:83656600-83674400	Weak transcription	HepG2	liver
41	chr15:83656800-83660800	Strong transcription	Placenta	Placenta
42	chr15:83656800-83668800	Weak transcription	Small Intestine	intestine
43	chr15:83657000-83660600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:83657000-83660600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:83657000-83660600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:83657000-83660600	Strong transcription	Liver	Liver
47	chr15:83657000-83660600	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr15:83657000-83660800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:83657000-83661800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr15:83657200-83660600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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