Variant report

Variant	rs1126268
Chromosome Location	chr3:59750791-59750792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1385715	0.83[TSI][hapmap]
rs1485723	0.84[TSI][hapmap]
rs49411	0.85[CEU][hapmap]
rs994930	0.96[CEU][hapmap];0.85[GIH][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:59745200-59757000	Weak transcription	Dnd41	blood
4	chr3:59745400-59751200	Weak transcription	Osteobl	bone
5	chr3:59745600-59751200	Weak transcription	Fetal Lung	lung
6	chr3:59745600-59752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:59747000-59751000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:59748400-59752600	Enhancers	Fetal Muscle Leg	muscle
12	chr3:59748600-59752200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:59748800-59751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:59748800-59752800	Enhancers	NHDF-Ad	bronchial
15	chr3:59749400-59752800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:59750000-59751200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:59750200-59756800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
19	chr3:59750400-59750800	Enhancers	Fetal Brain Male	brain
20	chr3:59750400-59751200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:59750400-59754600	Weak transcription	Fetal Brain Female	brain
22	chr3:59750400-59755000	Weak transcription	Fetal Thymus	thymus
23	chr3:59750600-59750800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr3:59750600-59751000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links