Variant report

Variant	rs1385715
Chromosome Location	chr3:59741515-59741516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1126268	0.83[TSI][hapmap]
rs1349020	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1485723	0.96[CEU][hapmap];0.80[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4679608	0.80[CEU][hapmap]
rs994929	0.97[EUR][1000 genomes]
rs994930	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1385715	C3orf14	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59735800-59742400	Weak transcription	Ovary	ovary
2	chr3:59737600-59741600	Enhancers	Fetal Thymus	thymus
3	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
4	chr3:59738400-59742200	Enhancers	Dnd41	blood
5	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:59738800-59741600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:59740200-59742400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:59740200-59743800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:59740200-59743800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:59740200-59744800	Weak transcription	Fetal Lung	lung
15	chr3:59740200-59746000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:59740400-59744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:59740400-59744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:59740600-59741600	Enhancers	Stomach Mucosa	stomach
19	chr3:59740600-59743800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:59740600-59744000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:59740800-59741800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:59740800-59743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:59741000-59744600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:59741000-59744600	Weak transcription	NHDF-Ad	bronchial
25	chr3:59741000-59745000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:59741200-59741600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:59741200-59741600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr3:59741200-59744000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:59741200-59744800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:59741200-59745000	Weak transcription	Fetal Intestine Small	intestine
31	chr3:59741400-59744600	Weak transcription	Thymus	Thymus
32	chr3:59741400-59745000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:59741400-59746600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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