Variant report

Variant	rs11264409
Chromosome Location	chr1:155715641-155715642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155713796..155716545-chr1:155826802..155829458,2	K562	blood:
2	chr1:155714978..155715778-chr6:52226417..52227287,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000170915	Chromatin interaction
ENSG00000132718	Chromatin interaction
ENSG00000116580	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10908480	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10908481	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10908482	0.98[ASN][1000 genomes]
rs11264410	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12035524	0.80[ASN][1000 genomes]
rs12040894	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12081192	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12407800	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12744132	0.80[ASN][1000 genomes]
rs2297775	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28582361	0.86[ASN][1000 genomes]
rs28662267	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2948071	0.86[ASN][1000 genomes]
rs2948072	0.87[ASN][1000 genomes]
rs2985707	0.89[ASN][1000 genomes]
rs348196	0.80[ASN][1000 genomes]
rs3738590	0.82[ASN][1000 genomes]
rs4278368	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs490608	0.93[ASN][1000 genomes]
rs6427286	0.97[ASN][1000 genomes]
rs6427287	0.97[ASN][1000 genomes]
rs6662953	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6665227	0.98[ASN][1000 genomes]
rs708611	0.92[ASN][1000 genomes]
rs7521594	0.82[ASN][1000 genomes]
rs7541060	0.97[ASN][1000 genomes]
rs7550402	0.97[ASN][1000 genomes]
rs821551	0.80[ASN][1000 genomes]
rs822025	0.87[ASN][1000 genomes]
rs822527	0.91[ASN][1000 genomes]
rs860295	0.83[ASN][1000 genomes]
rs9426933	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv3065	chr1:155682768-155727524	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155714000-155716800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:155714600-155716000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr1:155714600-155716000	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr1:155714600-155716200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:155714600-155716200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:155714600-155716200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:155714600-155716200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:155714600-155716200	Active TSS	Brain Hippocampus Middle	brain
9	chr1:155714600-155716600	Active TSS	HMEC	breast
10	chr1:155714600-155716800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:155714800-155716000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:155714800-155716000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:155714800-155716000	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:155714800-155716000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:155714800-155716000	Active TSS	Right Ventricle	heart
16	chr1:155714800-155716000	Active TSS	HSMMtube	muscle
17	chr1:155714800-155716000	Active TSS	NHDF-Ad	bronchial
18	chr1:155714800-155716200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr1:155714800-155716200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:155714800-155716200	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr1:155714800-155716200	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr1:155714800-155716200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:155714800-155716200	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr1:155714800-155716200	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr1:155714800-155716200	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr1:155714800-155716200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:155714800-155716200	Active TSS	Fetal Brain Female	brain
28	chr1:155714800-155716200	Active TSS	Fetal Intestine Large	intestine
29	chr1:155714800-155716200	Active TSS	Fetal Muscle Leg	muscle
30	chr1:155714800-155716200	Active TSS	HSMM	muscle
31	chr1:155714800-155716200	Active TSS	NHLF	lung
32	chr1:155714800-155716600	Active TSS	GM12878-XiMat	blood
33	chr1:155715000-155716000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:155715000-155716000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:155715000-155716000	Active TSS	Brain Angular Gyrus	brain
36	chr1:155715000-155716000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:155715000-155716000	Active TSS	Esophagus	oesophagus
38	chr1:155715000-155716000	Active TSS	Placenta	Placenta
39	chr1:155715000-155716000	Active TSS	Fetal Thymus	thymus
40	chr1:155715000-155716000	Active TSS	Left Ventricle	heart
41	chr1:155715000-155716000	Active TSS	Psoas Muscle	Psoas
42	chr1:155715000-155716200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:155715000-155716200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr1:155715000-155716200	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr1:155715000-155716200	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr1:155715000-155716200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:155715000-155716200	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr1:155715000-155716200	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr1:155715000-155716200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr1:155715000-155716200	Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links