Variant report

Variant	rs11265160
Chromosome Location	chr1:159235751-159235752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11265144	0.91[AFR][1000 genomes]
rs12095993	1.00[AFR][1000 genomes]
rs35367087	0.91[AFR][1000 genomes]
rs35808847	0.91[AFR][1000 genomes]
rs35835761	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159232800-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159233200-159236000	Weak transcription	NHEK	skin
3	chr1:159233200-159236200	Weak transcription	HUVEC	blood vessel
4	chr1:159233400-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:159235600-159236800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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