Variant report

Variant	rs35808847
Chromosome Location	chr1:159199058-159199059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11265144	1.00[AFR][1000 genomes]
rs11265160	0.91[AFR][1000 genomes]
rs12095993	0.91[AFR][1000 genomes]
rs35367087	1.00[AFR][1000 genomes]
rs35835761	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159193000-159199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:159197600-159201600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:159198000-159202000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:159198400-159199200	Enhancers	Hela-S3	cervix
5	chr1:159198400-159200600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:159198800-159199800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:159199000-159200200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:159199000-159200200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:159199000-159200200	Enhancers	HMEC	breast
10	chr1:159199000-159200600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:159199000-159201600	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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