Variant report

Variant	rs112685574
Chromosome Location	chr6:31865361-31865362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:286)
CpG islands
(count:0)
Chromatin interactive
region (count:41)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:286 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:31865156-31865810	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr6:31865191-31865843	ECC-1	luminal epithelium:	n/a	chr6:31865637-31865645 chr6:31865685-31865692
3	RCOR1	chr6:31865359-31865737	K562	blood:	n/a	n/a
4	TAF1	chr6:31865188-31865862	ECC-1	luminal epithelium:	n/a	n/a
5	USF1	chr6:31865237-31865778	H1-hESC	embryonic stem cell:	n/a	chr6:31865496-31865507
6	ELF1	chr6:31865096-31865697	GM12878	blood:	n/a	n/a
7	POLR2A	chr6:31865064-31865761	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:31865305-31865974	U87	brain:	n/a	n/a
9	YY1	chr6:31865223-31865867	K562	blood:	n/a	n/a
10	USF1	chr6:31865270-31865723	A549	lung:	n/a	chr6:31865496-31865507
11	TBP	chr6:31865355-31865755	H1-hESC	embryonic stem cell:	n/a	n/a
12	USF1	chr6:31865264-31865801	ECC-1	luminal epithelium:	n/a	chr6:31865496-31865507
13	TAF1	chr6:31865227-31866062	ECC-1	luminal epithelium:	n/a	n/a
14	MYBL2	chr6:31865329-31866580	HepG2	liver:	n/a	n/a
15	MAX	chr6:31865286-31865740	H1-hESC	embryonic stem cell:	n/a	chr6:31865500-31865509
16	ATF3	chr6:31865336-31865746	K562	blood:	n/a	chr6:31865348-31865357
17	USF1	chr6:31865296-31865699	A549	lung:	n/a	chr6:31865496-31865507
18	POLR2A	chr6:31865322-31865869	SK-N-MC	brain:	n/a	n/a
19	POLR2A	chr6:31865189-31865995	Hela-S3	cervix:	n/a	n/a
20	MAX	chr6:31865038-31865757	HepG2	liver:	n/a	chr6:31865500-31865509 chr6:31865146-31865162
21	POLR2A	chr6:31865174-31866861	PFSK-1	brain:	n/a	n/a
22	CTCF	chr6:31865333-31865551	IMR90	lung:	n/a	n/a
23	MAX	chr6:31865250-31866153	A549	lung:	n/a	chr6:31865500-31865509
24	POLR2A	chr6:31865173-31866674	ECC-1	luminal epithelium:	n/a	n/a
25	TCF12	chr6:31865323-31866644	A549	lung:	n/a	chr6:31865637-31865645 chr6:31865685-31865692
26	USF1	chr6:31865235-31866569	ECC-1	luminal epithelium:	n/a	chr6:31865496-31865507
27	YY1	chr6:31865134-31865807	GM12891	blood:	n/a	chr6:31865197-31865208
28	BHLHE40	chr6:31864968-31866504	K562	blood:	n/a	chr6:31865197-31865213 chr6:31865051-31865067
29	HDAC2	chr6:31865073-31866035	HepG2	liver:	n/a	chr6:31865637-31865656
30	MAX	chr6:31865026-31866474	NB4	blood:	n/a	chr6:31865500-31865509 chr6:31865146-31865162
31	POLR2A	chr6:31865029-31865754	A549	lung:	n/a	n/a
32	CTCF	chr6:31865320-31865470	AoAF	blood vessel:	n/a	n/a
33	MAZ	chr6:31864710-31866608	GM12878	blood:	n/a	chr6:31865500-31865509 chr6:31865146-31865162
34	POLR2A	chr6:31865043-31865751	GM12878	blood:	n/a	n/a
35	PBX3	chr6:31865176-31866818	SK-N-SH	brain:	n/a	chr6:31866589-31866598
36	RAD21	chr6:31865253-31865718	H1-hESC	embryonic stem cell:	n/a	chr6:31865269-31865283
37	CREB1	chr6:31865238-31865576	A549	lung:	n/a	n/a
38	POLR2A	chr6:31865204-31865747	HepG2	liver:	n/a	n/a
39	YY1	chr6:31865092-31866419	SK-N-SH	brain:	n/a	chr6:31865197-31865208
40	MAX	chr6:31865279-31866562	ECC-1	luminal epithelium:	n/a	chr6:31865500-31865509
41	POLR2A	chr6:31865286-31866424	HL-60	blood:	n/a	n/a
42	CTCF	chr6:31865320-31865470	GM12866	blood:	n/a	n/a
43	POLR2A	chr6:31865214-31865853	K562	blood:	n/a	n/a
44	POLR2A	chr6:31864958-31866200	H1-hESC	embryonic stem cell:	n/a	n/a
45	TAF1	chr6:31865284-31865715	PFSK-1	brain:	n/a	n/a
46	POLR2A	chr6:31865313-31865737	A549	lung:	n/a	n/a
47	YY1	chr6:31865266-31865977	SK-N-SH	brain:	n/a	n/a
48	ELF1	chr6:31864628-31865983	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:31865086-31865874	GM12892	blood:	n/a	n/a
50	POLR2A	chr6:31865040-31865704	A549	lung:	n/a	n/a

No data

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31864040..31872511-chr6:31917614..31930102,27	MCF-7	breast:
2	chr6:31856075..31861147-chr6:31862978..31867521,9	K562	blood:
3	chr6:31859669..31862692-chr6:31863697..31866493,6	MCF-7	breast:
4	chr6:31668504..31670633-chr6:31865302..31866839,2	K562	blood:
5	chr6:31863236..31865768-chr6:31937517..31940391,2	K562	blood:
6	chr6:31864683..31867105-chr6:31939845..31941610,2	K562	blood:
7	chr6:31629180..31631831-chr6:31863567..31866267,3	K562	blood:
8	chr6:31705886..31708099-chr6:31864785..31867152,2	K562	blood:
9	chr6:31851566..31853842-chr6:31864020..31866737,2	MCF-7	breast:
10	chr6:31800669..31805219-chr6:31862460..31868046,11	K562	blood:
11	chr6:31506998..31509094-chr6:31864561..31866443,2	MCF-7	breast:
12	chr6:31618484..31622073-chr6:31864833..31868659,4	K562	blood:
13	chr6:31864115..31868338-chr6:31917147..31921993,5	K562	blood:
14	chr6:31670378..31672824-chr6:31863319..31865557,3	K562	blood:
15	chr6:31863494..31865862-chr6:32150158..32153094,2	K562	blood:
16	chr6:31793170..31796834-chr6:31863715..31868848,6	K562	blood:
17	chr6:31864770..31867210-chr6:31916768..31918647,2	K562	blood:
18	chr6:31780956..31783456-chr6:31865283..31866829,2	K562	blood:
19	chr6:31864712..31866806-chr6:31924793..31927734,3	K562	blood:
20	chr6:31865326..31867816-chr6:32162690..32165281,2	K562	blood:
21	chr6:31863902..31865476-chr6:32142561..32145148,2	K562	blood:
22	chr6:31618325..31621676-chr6:31863690..31867276,5	K562	blood:
23	chr6:31801616..31806746-chr6:31865132..31870777,8	MCF-7	breast:
24	chr6:31864133..31871768-chr6:31886295..31891953,13	MCF-7	breast:
25	chr6:31798354..31804916-chr6:31860790..31871982,18	MCF-7	breast:
26	chr6:31627970..31635325-chr6:31864036..31871429,12	K562	blood:
27	chr6:31828023..31833065-chr6:31863439..31869544,9	K562	blood:
28	chr6:31861403..31866645-chr6:31932025..31935945,5	MCF-7	breast:
29	chr6:31829731..31832430-chr6:31863949..31866099,3	K562	blood:
30	chr6:31836840..31843251-chr6:31862592..31868285,8	MCF-7	breast:
31	chr6:31836750..31839391-chr6:31864326..31866210,2	K562	blood:
32	chr6:31758020..31763887-chr6:31863868..31868391,6	K562	blood:
33	chr6:31850468..31854025-chr6:31863862..31867993,5	MCF-7	breast:
34	chr6:31830083..31833987-chr6:31862759..31865610,4	MCF-7	breast:
35	chr6:31862879..31872535-chr6:31911667..31928766,47	MCF-7	breast:
36	chr6:31780574..31784383-chr6:31865157..31867218,4	K562	blood:
37	chr6:31863628..31867852-chr6:31937946..31941812,10	MCF-7	breast:
38	chr6:31864068..31872693-chr6:31934470..31941847,12	MCF-7	breast:
39	chr6:31843997..31846007-chr6:31863630..31865953,2	K562	blood:
40	chr6:31800867..31807275-chr6:31862460..31868132,16	K562	blood:
41	chr6:31795475..31798260-chr6:31864062..31867064,3	K562	blood:

No data

Variant related genes	Relation type
EHMT2	TF binding region
C2	TF binding region
ENSG00000204348	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000237080	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000221267	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000204356	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000266776	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000255152	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000204410	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000204305	Chromatin interaction
ENSG00000263020	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
14	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
15	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
16	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
17	nsv884472	chr6:31813898-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
18	nsv508399	chr6:31829474-31902423	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
19	nsv884474	chr6:31836055-31870326	Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
20	nsv462875	chr6:31838441-31907147	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv601960	chr6:31838441-31907147	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	nsv884475	chr6:31840625-31880320	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
23	nsv884476	chr6:31848000-31870326	Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
24	nsv884477	chr6:31850724-31870326	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
25	nsv884478	chr6:31850724-31874505	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
26	nsv884479	chr6:31850724-31878433	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
27	nsv884480	chr6:31851234-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
28	nsv884481	chr6:31851234-31878433	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
29	nsv884482	chr6:31851234-31880320	Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
30	nsv966619	chr6:31852653-31870444	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
31	nsv884483	chr6:31852692-31868075	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	42 gene(s)	inside rSNPs	diseases
32	nsv884484	chr6:31854543-31879158	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	50 gene(s)	inside rSNPs	diseases
33	nsv884485	chr6:31860576-31880320	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
34	nsv884486	chr6:31861207-31869135	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	46 gene(s)	inside rSNPs	diseases
35	nsv884487	chr6:31861207-31870326	Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
36	nsv884488	chr6:31861207-31870856	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
37	nsv884489	chr6:31861207-31870856	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
38	nsv884490	chr6:31861207-31871485	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
39	nsv884491	chr6:31861207-31872551	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
40	nsv884492	chr6:31861207-31874505	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
41	nsv884493	chr6:31861207-31876647	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
42	nsv884494	chr6:31861207-31876647	Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
43	nsv884495	chr6:31861207-31878433	Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
44	nsv884496	chr6:31861207-31878495	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
45	nsv884497	chr6:31861207-31879158	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
46	nsv884498	chr6:31861207-31880320	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
47	esv3392811	chr6:31864198-31866746	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	37 gene(s)	inside rSNPs	diseases
48	nsv884499	chr6:31864304-31872551	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
49	nsv884500	chr6:31864304-31873465	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
50	nsv884501	chr6:31864304-31874505	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31864000-31866200	Active TSS	Brain Angular Gyrus	brain
2	chr6:31864200-31865800	Active TSS	HSMM	muscle
3	chr6:31864200-31866000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:31864200-31866200	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:31864200-31866400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:31864200-31866400	Active TSS	Lung	lung
7	chr6:31864200-31866600	Active TSS	Right Atrium	heart
8	chr6:31864400-31866000	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:31864400-31866000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:31864400-31866000	Active TSS	Fetal Kidney	kidney
11	chr6:31864400-31866200	Active TSS	Gastric	stomach
12	chr6:31864400-31866200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr6:31864400-31866400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:31864400-31866400	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:31864400-31866400	Active TSS	NHDF-Ad	bronchial
16	chr6:31864400-31866800	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:31864600-31865600	Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:31864600-31865600	Active TSS	HSMMtube	muscle
19	chr6:31864600-31865800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:31864600-31865800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:31864600-31866000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:31864600-31866000	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:31864600-31866000	Active TSS	Fetal Lung	lung
24	chr6:31864600-31866200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:31864600-31866200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:31864600-31866200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:31864600-31866200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:31864600-31866200	Active TSS	A549	lung
29	chr6:31864600-31866200	Active TSS	NHLF	lung
30	chr6:31864600-31866400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:31864600-31866400	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:31864600-31866400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:31864600-31866400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:31864600-31866400	Active TSS	Fetal Intestine Large	intestine
35	chr6:31864600-31866400	Active TSS	Psoas Muscle	Psoas
36	chr6:31864600-31866600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:31864600-31866600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:31864600-31866600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:31864600-31866600	Active TSS	Esophagus	oesophagus
40	chr6:31864600-31866600	Active TSS	Ovary	ovary
41	chr6:31864600-31866800	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:31864600-31866800	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:31864800-31865400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:31864800-31865400	Enhancers	Fetal Brain Male	brain
45	chr6:31864800-31865600	Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr6:31864800-31865600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:31864800-31865600	Active TSS	Adipose Nuclei	Adipose
48	chr6:31864800-31865600	Weak transcription	Fetal Heart	heart
49	chr6:31864800-31865600	Active TSS	HepG2	liver
50	chr6:31864800-31865800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links