Variant report

Variant	rs112880667
Chromosome Location	chrX:57149972-57149973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391838	chrX:57144560-57160412	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3347206	chrX:57147222-57159535	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv33226	chrX:57148376-57160464	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57148600-57151000	Weak transcription	Primary B cells from peripheral blood	blood
2	chrX:57148600-57159200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chrX:57148800-57153800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chrX:57148800-57155000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chrX:57148800-57156200	Weak transcription	HepG2	liver
6	chrX:57148800-57163200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chrX:57148800-57163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:57149000-57161800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:57149200-57154200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:57149200-57163400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chrX:57149400-57153600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chrX:57149400-57158200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:57149400-57158400	Weak transcription	Dnd41	blood
14	chrX:57149400-57163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chrX:57149400-57163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links