Variant report

Variant	rs1129456
Chromosome Location	chr15:33026667-33026668
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17228641	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17525764	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17816363	0.81[CEU][hapmap]
rs2280738	0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs28482374	0.80[EUR][1000 genomes]
rs28564029	0.80[EUR][1000 genomes]
rs28617440	0.80[EUR][1000 genomes]
rs28768389	0.80[EUR][1000 genomes]
rs28855511	0.96[EUR][1000 genomes]
rs3812933	0.88[ASN][1000 genomes]
rs8041794	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9920024	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33023400-33028600	Strong transcription	NH-A	brain
2	chr15:33023600-33027200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:33023600-33028200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:33023600-33029200	Strong transcription	Stomach Smooth Muscle	stomach
5	chr15:33023600-33035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:33024200-33029200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:33025000-33026800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:33025600-33026800	Strong transcription	NHDF-Ad	bronchial
9	chr15:33025600-33027000	Genic enhancers	Muscle Satellite Cultured Cells	--
10	chr15:33025600-33037800	Weak transcription	HSMMtube	muscle
11	chr15:33025800-33027800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:33025800-33028800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:33025800-33035600	Weak transcription	HSMM	muscle
14	chr15:33026200-33027800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:33026200-33028200	Strong transcription	Osteobl	bone
16	chr15:33026200-33028800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:33026600-33027800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links