Variant report

Variant	rs2280738
Chromosome Location	chr15:33023098-33023099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1129456	0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs17525764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28855511	0.96[ASN][1000 genomes]
rs3812933	0.94[ASN][1000 genomes]
rs73376934	1.00[EUR][1000 genomes]
rs8040882	1.00[AFR][1000 genomes]
rs8041794	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33012000-33023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:33012400-33023200	Weak transcription	HSMM	muscle
3	chr15:33013600-33023400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:33017000-33024200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:33020400-33023400	Weak transcription	HSMMtube	muscle
6	chr15:33021000-33023200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:33021600-33023400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:33021800-33023400	Genic enhancers	NH-A	brain
9	chr15:33021800-33025000	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:33021800-33025600	Genic enhancers	NHDF-Ad	bronchial
11	chr15:33022000-33023200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:33022000-33023200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:33022000-33023200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:33022000-33023200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr15:33022000-33023400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:33022000-33023600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:33022000-33023600	Enhancers	NHEK	skin
18	chr15:33022000-33025200	Genic enhancers	Muscle Satellite Cultured Cells	--
19	chr15:33022000-33025200	Genic enhancers	Osteobl	bone
20	chr15:33022200-33023200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:33022200-33023200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr15:33022200-33023200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr15:33022200-33024200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:33022200-33024200	Genic enhancers	NHLF	lung
25	chr15:33022400-33023200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:33022400-33023200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:33022400-33023200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr15:33022400-33023400	Bivalent Enhancer	HepG2	liver
29	chr15:33022600-33023200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:33022600-33023200	Enhancers	Fetal Heart	heart
31	chr15:33022600-33023400	Enhancers	Primary hematopoietic stem cells	blood
32	chr15:33022600-33023400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:33022600-33023400	Enhancers	Hela-S3	cervix
34	chr15:33022600-33023600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:33022600-33023800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr15:33022800-33023200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:33022800-33023400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:33022800-33023400	Enhancers	Placenta	Placenta
39	chr15:33022800-33023800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:33022800-33025000	Bivalent Enhancer	Fetal Brain Male	brain
41	chr15:33023000-33023200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:33023000-33023200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
43	chr15:33023000-33023200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr15:33023000-33023400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:33023000-33023400	Bivalent Enhancer	Colonic Mucosa	Colon
46	chr15:33023000-33023400	Enhancers	Gastric	stomach
47	chr15:33023000-33023400	Enhancers	HMEC	breast
48	chr15:33023000-33023400	Active TSS	Monocytes-CD14+_RO01746	blood
49	chr15:33023000-33023600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:33023000-33023600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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