Variant report

Variant	rs113009999
Chromosome Location	chr4:62274132-62274133
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3395495	chr4:62274057-62276580	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62272800-62274600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:62273000-62274400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:62273200-62274200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62273200-62274200	Enhancers	Brain Anterior Caudate	brain
5	chr4:62273200-62274400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62273200-62274400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:62273200-62274400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:62273400-62274200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:62273400-62274200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:62273400-62274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:62273400-62274200	Enhancers	Fetal Lung	lung
12	chr4:62273400-62274400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:62273400-62282600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:62273400-62290400	Weak transcription	Fetal Stomach	stomach
15	chr4:62273600-62274200	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr4:62273800-62274200	Active TSS	Brain Cingulate Gyrus	brain
17	chr4:62273800-62274200	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr4:62274000-62274200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:62274000-62274200	Enhancers	Brain Substantia Nigra	brain
20	chr4:62274000-62274200	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr4:62274000-62274800	Enhancers	NHEK	skin
22	chr4:62274000-62275400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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