Variant report

Variant	rs11320372
Chromosome Location	chr3:28905743-28905744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10212119	0.81[EUR][1000 genomes]
rs11709945	0.90[EUR][1000 genomes]
rs11713577	0.89[EUR][1000 genomes]
rs12632615	0.84[EUR][1000 genomes]
rs12715148	0.90[EUR][1000 genomes]
rs13320621	0.90[EUR][1000 genomes]
rs1392303	0.89[EUR][1000 genomes]
rs1965352	0.90[EUR][1000 genomes]
rs4490310	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6777025	0.82[EUR][1000 genomes]
rs6779539	0.89[EUR][1000 genomes]
rs6793728	0.86[EUR][1000 genomes]
rs6796867	0.90[EUR][1000 genomes]
rs6799656	0.89[EUR][1000 genomes]
rs7639242	0.90[EUR][1000 genomes]
rs9310872	0.81[EUR][1000 genomes]
rs9808984	0.81[EUR][1000 genomes]
rs9826714	0.84[EUR][1000 genomes]
rs9826881	0.88[EUR][1000 genomes]
rs9831526	0.83[EUR][1000 genomes]
rs9839941	0.89[EUR][1000 genomes]
rs9847735	0.81[EUR][1000 genomes]
rs9863969	0.84[EUR][1000 genomes]
rs9877423	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876652	chr3:28811329-28947691	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28903000-28916600	Weak transcription	Psoas Muscle	Psoas
2	chr3:28903800-28909200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:28903800-28928200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:28904000-28909200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:28905000-28909200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:28905200-28909200	Weak transcription	HSMMtube	muscle
7	chr3:28905600-28905800	Enhancers	Brain Germinal Matrix	brain

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