Variant report

Variant	rs11709945
Chromosome Location	chr3:28910089-28910090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212119	0.83[EUR][1000 genomes]
rs11320372	0.90[EUR][1000 genomes]
rs11713577	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717153	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12632615	0.85[EUR][1000 genomes]
rs12715148	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320621	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1353923	1.00[ASN][1000 genomes]
rs1353928	1.00[ASN][1000 genomes]
rs1353929	1.00[ASN][1000 genomes]
rs1392299	1.00[ASN][1000 genomes]
rs1392303	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392307	0.80[EUR][1000 genomes]
rs1500008	1.00[ASN][1000 genomes]
rs1500009	1.00[ASN][1000 genomes]
rs17654965	1.00[ASN][1000 genomes]
rs1965352	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2201985	1.00[ASN][1000 genomes]
rs2888035	0.80[EUR][1000 genomes]
rs6764257	0.98[ASN][1000 genomes]
rs6777025	0.83[EUR][1000 genomes]
rs6779539	0.90[EUR][1000 genomes]
rs6793728	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6796867	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6799656	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805815	0.97[ASN][1000 genomes]
rs7620147	0.80[EUR][1000 genomes]
rs7639242	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310872	0.83[EUR][1000 genomes]
rs9808984	0.83[EUR][1000 genomes]
rs9820080	0.94[ASN][1000 genomes]
rs9826714	0.85[EUR][1000 genomes]
rs9826881	0.90[EUR][1000 genomes]
rs9831526	0.84[EUR][1000 genomes]
rs9833538	0.98[ASN][1000 genomes]
rs9837208	1.00[ASN][1000 genomes]
rs9839941	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9846314	1.00[ASN][1000 genomes]
rs9847735	0.83[EUR][1000 genomes]
rs9863969	0.85[EUR][1000 genomes]
rs9877423	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876652	chr3:28811329-28947691	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28903000-28916600	Weak transcription	Psoas Muscle	Psoas
2	chr3:28903800-28928200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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