Variant report

Variant	rs1132204
Chromosome Location	chr17:67321875-67321876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:67302832..67306346-chr17:67321797..67325175,5	MCF-7	breast:
2	chr17:67319063..67338122-chr17:73766152..73783684,87	MCF-7	breast:
3	chr17:67321326..67323057-chr17:73804111..73806636,2	MCF-7	breast:
4	chr17:67320335..67330619-chr17:73766697..73778324,31	MCF-7	breast:
5	chr17:67321198..67325432-chr17:73812405..73817349,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABCA10-4	chr17:67321840-67321958	NONHSAT055577

No data

Variant related genes	Relation type
ENSG00000132478	Chromatin interaction
ENSG00000266980	Chromatin interaction
ENSG00000154265	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000263565	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35802197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8070591	1.00[AMR][1000 genomes]
rs8075063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
3	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
4	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv575935	chr17:67256162-67327806	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
6	nsv457890	chr17:67264339-67327806	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
7	nsv575936	chr17:67264339-67327806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
8	nsv908706	chr17:67290840-67332355	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a
9	nsv575937	chr17:67304447-67327806	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67261400-67322000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:67311000-67322000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:67311200-67322000	Weak transcription	Brain Anterior Caudate	brain
4	chr17:67319800-67322600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:67320400-67322400	Enhancers	Small Intestine	intestine
6	chr17:67320600-67323800	Active TSS	GM12878-XiMat	blood
7	chr17:67321200-67322000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:67321200-67322200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr17:67321400-67322000	Flanking Active TSS	HMEC	breast
10	chr17:67321400-67322200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:67321400-67322400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr17:67321400-67322400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr17:67321400-67323600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:67321400-67323600	Active TSS	Fetal Intestine Small	intestine
15	chr17:67321400-67323800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr17:67321400-67323800	Active TSS	Fetal Intestine Large	intestine
17	chr17:67321400-67324000	Active TSS	Psoas Muscle	Psoas
18	chr17:67321400-67324200	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr17:67321600-67322000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr17:67321600-67322000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr17:67321600-67322000	Active TSS	Adipose Nuclei	Adipose
22	chr17:67321600-67322000	Active TSS	Brain Angular Gyrus	brain
23	chr17:67321600-67322000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr17:67321600-67322200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr17:67321600-67322200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:67321600-67322200	Flanking Active TSS	HepG2	liver
27	chr17:67321600-67322600	Flanking Active TSS	Liver	Liver
28	chr17:67321600-67322600	Flanking Active TSS	NHEK	skin
29	chr17:67321600-67323400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:67321600-67323600	Active TSS	Duodenum Mucosa	Duodenum
31	chr17:67321600-67324000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr17:67321800-67322000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
33	chr17:67321800-67322000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:67321800-67322000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr17:67321800-67322000	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr17:67321800-67322000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr17:67321800-67322000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr17:67321800-67322000	Flanking Active TSS	Esophagus	oesophagus
39	chr17:67321800-67322000	Flanking Active TSS	Fetal Heart	heart
40	chr17:67321800-67322000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr17:67321800-67322000	Enhancers	Fetal Muscle Leg	muscle
42	chr17:67321800-67322000	Flanking Active TSS	Gastric	stomach
43	chr17:67321800-67322000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr17:67321800-67322000	Flanking Active TSS	Right Atrium	heart
45	chr17:67321800-67322000	Flanking Active TSS	Right Ventricle	heart
46	chr17:67321800-67322000	Active TSS	Stomach Smooth Muscle	stomach
47	chr17:67321800-67322000	Enhancers	A549	lung
48	chr17:67321800-67322000	Active TSS	Hela-S3	cervix
49	chr17:67321800-67322000	Enhancers	NH-A	brain
50	chr17:67321800-67322000	Enhancers	NHLF	lung

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