Variant report

Variant	rs113224306
Chromosome Location	chr15:44672763-44672764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:44672380-44672884	SK-N-SH	brain:	n/a	chr15:44672685-44672695
2	GATA3	chr15:44672406-44672856	SK-N-SH	brain:	n/a	chr15:44672685-44672695

Variant related genes	Relation type
CASC4	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv904178	chr15:44609796-44724287	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv569300	chr15:44609796-44763598	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
15	nsv977853	chr15:44672110-44694938	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44641000-44677000	Weak transcription	Brain Anterior Caudate	brain
2	chr15:44641000-44681600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:44641000-44696000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:44641200-44673000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:44641200-44677200	Weak transcription	HepG2	liver
6	chr15:44641200-44696000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:44641400-44682200	Weak transcription	Colonic Mucosa	Colon
8	chr15:44647400-44677200	Weak transcription	Osteobl	bone
9	chr15:44647400-44682000	Weak transcription	NHLF	lung
10	chr15:44647600-44677800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:44647600-44685800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:44647600-44686400	Weak transcription	NHEK	skin
13	chr15:44647600-44692400	Weak transcription	Fetal Kidney	kidney
14	chr15:44647600-44710200	Weak transcription	Left Ventricle	heart
15	chr15:44647800-44692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:44648000-44689400	Weak transcription	Gastric	stomach
17	chr15:44655800-44718400	Weak transcription	Fetal Brain Female	brain
18	chr15:44657000-44719000	Weak transcription	Spleen	Spleen
19	chr15:44659200-44681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:44660000-44678800	Weak transcription	Ovary	ovary
21	chr15:44660200-44706200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:44661400-44707000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:44661400-44708400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:44661400-44718400	Weak transcription	Fetal Brain Male	brain
25	chr15:44661400-44718600	Weak transcription	Fetal Lung	lung
26	chr15:44661800-44680000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:44661800-44685600	Weak transcription	Psoas Muscle	Psoas
28	chr15:44661800-44718200	Weak transcription	Brain Angular Gyrus	brain
29	chr15:44662000-44677200	Weak transcription	HUVEC	blood vessel
30	chr15:44662600-44684400	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:44663000-44717600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:44663400-44676400	Weak transcription	GM12878-XiMat	blood
33	chr15:44663400-44700600	Weak transcription	Right Ventricle	heart
34	chr15:44663400-44718800	Weak transcription	Aorta	Aorta
35	chr15:44663600-44682400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:44663800-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:44664400-44677000	Weak transcription	Hela-S3	cervix
38	chr15:44665200-44685800	Weak transcription	Primary T cells from cord blood	blood
39	chr15:44665200-44709400	Weak transcription	Pancreas	Pancrea
40	chr15:44665400-44674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:44665600-44674600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:44665600-44675000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:44665800-44677200	Weak transcription	A549	lung
44	chr15:44667000-44685800	Weak transcription	Placenta	Placenta
45	chr15:44667000-44695000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:44667000-44718000	Weak transcription	Thymus	Thymus
47	chr15:44667200-44686200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:44667200-44690000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:44667200-44710200	Weak transcription	Fetal Intestine Large	intestine
50	chr15:44667200-44719000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links