Variant report

Variant	rs1135455
Chromosome Location	chr9:103350089-103350090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103348301..103352050-chr9:103353631..103357839,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10989168	0.95[ASN][1000 genomes]
rs1226588	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1226592	0.98[ASN][1000 genomes]
rs1226594	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1226596	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291670	0.93[ASN][1000 genomes]
rs13301089	0.97[ASN][1000 genomes]
rs1760290	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2151597	1.00[ASN][1000 genomes]
rs2489363	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489364	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2780954	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2780958	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780959	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2800283	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2800288	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2800289	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72735191	0.97[ASN][1000 genomes]
rs951868	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
2	chr9:103329800-103351800	Weak transcription	Ovary	ovary
3	chr9:103330000-103357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:103330400-103351600	Weak transcription	Fetal Stomach	stomach
5	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:103332400-103351600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:103332400-103357600	Weak transcription	Fetal Lung	lung
8	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
9	chr9:103334200-103351000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:103334600-103350600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:103334800-103350200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:103335000-103351000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:103337600-103352200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:103338800-103352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:103340600-103351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:103340800-103351400	Weak transcription	NHDF-Ad	bronchial
17	chr9:103341000-103351400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:103342600-103350400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr9:103342800-103351200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:103343200-103360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:103344200-103352200	Weak transcription	Brain Angular Gyrus	brain
22	chr9:103345800-103351800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:103346200-103359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:103346600-103350800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:103346600-103353600	Weak transcription	Psoas Muscle	Psoas
26	chr9:103347800-103350200	Strong transcription	Fetal Brain Female	brain
27	chr9:103348400-103350600	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:103348400-103351400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:103348400-103351800	Weak transcription	Brain Substantia Nigra	brain
30	chr9:103348400-103353400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:103348600-103361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:103348800-103360600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:103349000-103350200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:103349000-103353200	Enhancers	HUVEC	blood vessel
35	chr9:103349200-103350400	Enhancers	NH-A	brain
36	chr9:103349200-103351000	Enhancers	A549	lung
37	chr9:103349200-103352200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:103349200-103353000	Weak transcription	Brain Anterior Caudate	brain
39	chr9:103349400-103350200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr9:103349400-103350200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:103349400-103350200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:103349400-103350400	Enhancers	Fetal Heart	heart
43	chr9:103349400-103351400	Weak transcription	Right Ventricle	heart
44	chr9:103349600-103350200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:103349600-103350400	Enhancers	Hela-S3	cervix
46	chr9:103349600-103360800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:103349800-103350200	Enhancers	Left Ventricle	heart
48	chr9:103349800-103352000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:103349800-103359400	Weak transcription	Brain Germinal Matrix	brain
50	chr9:103350000-103350800	Weak transcription	HSMMtube	muscle

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