Variant report

Variant	rs1760290
Chromosome Location	chr9:103345963-103345964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10989168	0.93[ASN][1000 genomes]
rs1135455	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1226588	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1226592	0.97[ASN][1000 genomes]
rs1226594	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1226596	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13291670	0.92[ASN][1000 genomes]
rs13301089	0.95[ASN][1000 genomes]
rs2151597	0.98[ASN][1000 genomes]
rs2489363	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489364	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2780954	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2780958	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2780959	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2800283	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2800288	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2800289	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735191	0.95[ASN][1000 genomes]
rs951868	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103327800-103349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
4	chr9:103329800-103351800	Weak transcription	Ovary	ovary
5	chr9:103330000-103357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:103330400-103351600	Weak transcription	Fetal Stomach	stomach
7	chr9:103330800-103349400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:103332400-103351600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:103332400-103357600	Weak transcription	Fetal Lung	lung
11	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
12	chr9:103334200-103351000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:103334600-103350600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:103334800-103350200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:103335000-103351000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:103336800-103347800	Weak transcription	Brain Germinal Matrix	brain
17	chr9:103337600-103352200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:103338600-103348000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:103338800-103352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:103340600-103351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:103340800-103351400	Weak transcription	NHDF-Ad	bronchial
22	chr9:103341000-103351400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:103341800-103349000	Weak transcription	HUVEC	blood vessel
24	chr9:103342600-103350400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr9:103342800-103351200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:103343000-103349200	Weak transcription	NH-A	brain
27	chr9:103343000-103349600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:103343200-103360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:103344200-103347800	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:103344200-103347800	Weak transcription	Left Ventricle	heart
31	chr9:103344200-103352200	Weak transcription	Brain Angular Gyrus	brain
32	chr9:103344400-103346400	Genic enhancers	HSMM	muscle
33	chr9:103344400-103346600	Enhancers	Psoas Muscle	Psoas
34	chr9:103344400-103350000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:103344600-103348000	Weak transcription	Brain Anterior Caudate	brain
36	chr9:103344600-103348200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:103344800-103347200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:103344800-103347800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:103344800-103347800	Weak transcription	Brain Substantia Nigra	brain
40	chr9:103345000-103346800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:103345000-103347400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:103345000-103349000	Weak transcription	Right Ventricle	heart
43	chr9:103345200-103346000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:103345200-103346400	Strong transcription	Fetal Brain Female	brain
45	chr9:103345400-103346200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:103345400-103346400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:103345400-103346400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr9:103345400-103346800	Enhancers	Fetal Heart	heart
49	chr9:103345400-103348800	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr9:103345600-103346600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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