Variant report

Variant	rs1138176
Chromosome Location	chr3:49702264-49702265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49701796..49704696-chr3:49705542..49707912,3	MCF-7	breast:
2	chr3:49682194..49684719-chr3:49702030..49703731,2	MCF-7	breast:
3	chr3:49696156..49697699-chr3:49699685..49702329,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11917753	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs13071087	1.00[LWK][hapmap]
rs13083045	1.00[LWK][hapmap]
rs13317088	1.00[CHD][hapmap]
rs34964130	1.00[LWK][hapmap]
rs3916098	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1011428	chr3:49649989-49706068	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	esv1825898	chr3:49688948-49764849	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	esv1808511	chr3:49689880-49744825	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49685200-49708200	Strong transcription	Brain Germinal Matrix	brain
2	chr3:49685400-49708400	Strong transcription	Fetal Brain Female	brain
3	chr3:49686600-49710600	Weak transcription	Right Atrium	heart
4	chr3:49687600-49702400	Weak transcription	Right Ventricle	heart
5	chr3:49687600-49705800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:49690400-49710600	Weak transcription	Brain Substantia Nigra	brain
7	chr3:49692200-49710400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:49693200-49703200	Weak transcription	Gastric	stomach
9	chr3:49695200-49710600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:49695800-49704000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:49699600-49702800	Weak transcription	Pancreas	Pancrea
12	chr3:49700000-49710600	Weak transcription	Fetal Brain Male	brain
13	chr3:49700800-49704400	Strong transcription	Brain Anterior Caudate	brain
14	chr3:49701200-49703400	Enhancers	Liver	Liver
15	chr3:49701400-49702800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:49701400-49702800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:49701400-49703000	Enhancers	HepG2	liver
18	chr3:49701400-49704800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:49701600-49703400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:49701800-49702600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:49701800-49703000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:49701800-49703600	Genic enhancers	Brain Angular Gyrus	brain
23	chr3:49701800-49707000	Enhancers	Fetal Muscle Leg	muscle
24	chr3:49702000-49702400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:49702000-49702600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:49702000-49703400	Enhancers	Fetal Muscle Trunk	muscle
27	chr3:49702000-49704600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:49702000-49707400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:49702200-49702400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:49702200-49703800	Strong transcription	Brain Hippocampus Middle	brain
31	chr3:49702200-49704000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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