Variant report

Variant	rs3916098
Chromosome Location	chr3:49540950-49540951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49536506..49538909-chr3:49540133..49543021,2	K562	blood:
2	chr3:49539771..49542483-chr3:49542652..49545389,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1138176	1.00[CHD][hapmap]
rs11917753	1.00[CHD][hapmap]
rs11925136	1.00[CHD][hapmap]
rs2229010	1.00[MEX][hapmap]
rs34725101	1.00[CHD][hapmap]
rs4855871	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49509800-49547800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:49510000-49547800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49514600-49548000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:49515400-49547800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:49515400-49547800	Weak transcription	Fetal Brain Female	brain
6	chr3:49515400-49548800	Weak transcription	Esophagus	oesophagus
7	chr3:49517000-49547800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:49517200-49547800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:49522200-49547800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:49522400-49548000	Weak transcription	Spleen	Spleen
11	chr3:49523400-49548000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:49523400-49548000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:49523600-49548200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:49526000-49547800	Weak transcription	Dnd41	blood
15	chr3:49526000-49548000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:49527600-49547800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:49529600-49568600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:49530400-49547800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:49531000-49548000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:49531200-49547800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:49531400-49547600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:49531400-49547800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:49531400-49547800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:49531400-49547800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:49531600-49547800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:49531600-49547800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:49531600-49547800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:49531800-49547400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr3:49531800-49547800	Weak transcription	Brain Germinal Matrix	brain
30	chr3:49533000-49547800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:49533000-49547800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:49533000-49547800	Weak transcription	Ovary	ovary
33	chr3:49533000-49547800	Weak transcription	GM12878-XiMat	blood
34	chr3:49533200-49541000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:49533800-49547800	Weak transcription	Thymus	Thymus
36	chr3:49536600-49548000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:49538000-49548000	Weak transcription	Lung	lung
38	chr3:49538000-49554800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:49538200-49542400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:49538200-49548000	Weak transcription	Fetal Lung	lung
41	chr3:49538200-49548000	Weak transcription	Left Ventricle	heart
42	chr3:49538200-49550600	Weak transcription	Colonic Mucosa	Colon
43	chr3:49538400-49547600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:49538400-49547800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:49538400-49547800	Weak transcription	Gastric	stomach
46	chr3:49538400-49547800	Weak transcription	Right Ventricle	heart
47	chr3:49538400-49548000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:49538600-49541000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:49538600-49541400	Weak transcription	Fetal Kidney	kidney
50	chr3:49538600-49547800	Weak transcription	Fetal Thymus	thymus

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