Variant report

Variant	rs4855871
Chromosome Location	chr3:49484530-49484531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49449778..49451300-chr3:49483161..49485681,2	MCF-7	breast:
2	chr3:49376057..49377754-chr3:49482622..49485601,2	K562	blood:

Variant related genes	Relation type
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000114316	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11917753	1.00[CHD][hapmap]
rs11925136	1.00[CHD][hapmap]
rs34725101	1.00[CHD][hapmap]
rs35867420	1.00[CHD][hapmap]
rs3916098	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv963482	chr3:49459177-49486938	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49467400-49486400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:49481600-49486400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:49481600-49486400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:49481600-49486400	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:49481600-49486400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:49481600-49486400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:49481600-49486400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:49481600-49486400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:49481600-49486400	Weak transcription	HUVEC	blood vessel
10	chr3:49481600-49486400	Weak transcription	NHDF-Ad	bronchial
11	chr3:49481600-49486400	Weak transcription	NHEK	skin
12	chr3:49481800-49486400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:49481800-49486400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:49481800-49486400	Weak transcription	K562	blood
15	chr3:49481800-49486400	Weak transcription	Osteobl	bone
16	chr3:49481800-49492400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:49482000-49486400	Weak transcription	Adipose Nuclei	Adipose
18	chr3:49482000-49486400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:49482000-49498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:49482200-49486400	Weak transcription	Thymus	Thymus
21	chr3:49482400-49486400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:49482400-49486400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:49482400-49486400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:49482400-49486400	Weak transcription	Fetal Thymus	thymus
25	chr3:49482400-49486400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:49482600-49486200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:49482600-49486400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:49482600-49486400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:49482600-49486400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:49482600-49486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:49482600-49486400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:49482600-49486400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:49482600-49486400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:49482600-49486400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:49482600-49486400	Weak transcription	GM12878-XiMat	blood
36	chr3:49482800-49486400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr3:49483000-49486400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:49483000-49486400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:49484200-49484600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:49484400-49486400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:49484400-49486400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr3:49484400-49486400	Weak transcription	Primary B cells from cord blood	blood
43	chr3:49484400-49486400	Weak transcription	Hela-S3	cervix
44	chr3:49484400-49486400	Weak transcription	Monocytes-CD14+_RO01746	blood

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