Variant report

Variant	rs2229010
Chromosome Location	chr3:49569717-49569718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49059846..49061380-chr3:49568211..49569978,2	K562	blood:
2	chr3:49567781..49571690-chr3:49573086..49576036,4	K562	blood:
3	chr3:49567274..49570195-chr3:49712184..49713980,2	K562	blood:

Variant related genes	Relation type
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3916098	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49546200-49577000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:49547000-49572000	Weak transcription	Fetal Brain Male	brain
3	chr3:49548400-49577400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:49551400-49571400	Weak transcription	Stomach Mucosa	stomach
5	chr3:49551400-49572200	Weak transcription	NH-A	brain
6	chr3:49555800-49572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:49557600-49572000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:49560600-49572600	Weak transcription	Psoas Muscle	Psoas
9	chr3:49565400-49572400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:49566600-49571400	Strong transcription	Primary T cells from cord blood	blood
11	chr3:49566800-49570200	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:49566800-49570800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:49566800-49571800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:49566800-49572800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:49567000-49570200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:49567000-49570600	Strong transcription	A549	lung
17	chr3:49567000-49571000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr3:49567000-49571600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:49567000-49571600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:49567000-49571800	Strong transcription	Hela-S3	cervix
21	chr3:49567200-49570800	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr3:49567200-49571000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:49567200-49572200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:49567400-49570600	Strong transcription	Brain Angular Gyrus	brain
25	chr3:49567400-49571000	Strong transcription	Rectal Smooth Muscle	rectum
26	chr3:49567400-49571200	Strong transcription	Primary B cells from cord blood	blood
27	chr3:49567400-49571200	Strong transcription	Dnd41	blood
28	chr3:49567400-49571600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr3:49567400-49571800	Strong transcription	Fetal Intestine Large	intestine
30	chr3:49567400-49572200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr3:49567600-49570200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:49567600-49570400	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr3:49567600-49570400	Strong transcription	GM12878-XiMat	blood
34	chr3:49567600-49570400	Strong transcription	HSMM	muscle
35	chr3:49567600-49570600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:49567600-49570600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:49567600-49570600	Strong transcription	Brain Hippocampus Middle	brain
38	chr3:49567600-49570800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:49567600-49570800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:49567600-49570800	Strong transcription	NHEK	skin
41	chr3:49567600-49571000	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr3:49567600-49571400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:49567600-49571400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:49567600-49571400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr3:49567600-49572000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:49567800-49570400	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:49567800-49570600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:49567800-49570600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr3:49567800-49570800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr3:49567800-49570800	Strong transcription	Aorta	Aorta

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