Variant report

Variant	rs11381985
Chromosome Location	chr6:150263786-150263787
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150263150..150264777-chr6:150325600..150328449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv969456	chr6:150263659-150269861	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150261400-150264000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150262400-150263800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150262400-150263800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:150262400-150263800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:150262400-150263800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:150262400-150263800	Active TSS	Brain Angular Gyrus	brain
9	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
10	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
11	chr6:150262400-150263800	Active TSS	HSMMtube	muscle
12	chr6:150262400-150264000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:150262400-150264000	Bivalent/Poised TSS	Fetal Brain Female	brain
14	chr6:150262400-150264000	Active TSS	NHLF	lung
15	chr6:150262600-150263800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:150262600-150263800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr6:150262600-150263800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:150262600-150263800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:150262600-150263800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:150262600-150263800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:150262600-150263800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:150262600-150263800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:150262600-150263800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:150262600-150263800	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr6:150262600-150263800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:150262600-150263800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr6:150262600-150263800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
28	chr6:150262600-150263800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
29	chr6:150262600-150263800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
30	chr6:150262600-150263800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
31	chr6:150262600-150263800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr6:150262600-150263800	Flanking Bivalent TSS/Enh	Placenta	Placenta
33	chr6:150262600-150263800	Active TSS	A549	lung
34	chr6:150262600-150263800	Active TSS	Osteobl	bone
35	chr6:150262600-150264000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:150262600-150264000	Active TSS	Muscle Satellite Cultured Cells	--
37	chr6:150262800-150263800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:150262800-150263800	Active TSS	K562	blood
39	chr6:150262800-150264000	Active TSS	NH-A	brain
40	chr6:150262800-150264000	Active TSS	NHDF-Ad	bronchial
41	chr6:150263000-150263800	Active TSS	Primary T cells from cord blood	blood
42	chr6:150263200-150263800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:150263200-150263800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:150263200-150263800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr6:150263200-150263800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr6:150263200-150263800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr6:150263200-150263800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:150263200-150263800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
49	chr6:150263200-150263800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
50	chr6:150263200-150264000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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