Variant report

Variant	rs113984607
Chromosome Location	chr4:86979091-86979092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86974348..86976679-chr4:86978244..86980026,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998531	chr4:86966103-86980077	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv511259	chr4:86966327-86983232	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004688	chr4:86970230-86983232	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1005458	chr4:86974515-86991990	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv594757	chr4:86975062-86979252	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv594758	chr4:86975062-86979848	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3692828	chr4:86975062-86979927	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594759	chr4:86975062-86979927	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2763854	chr4:86975062-86983232	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv517318	chr4:86975062-86990027	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2760917	chr4:86975062-87000221	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3490301	chr4:86975278-86981026	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3490298	chr4:86975678-86980951	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv10529	chr4:86975878-86980886	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3465627	chr4:86975936-86980233	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3490305	chr4:86976079-86980408	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1014691	chr4:86976082-86986516	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv999551	chr4:86976082-86991990	ZNF genes & repeats Strong transcription Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1006616	chr4:86976082-86999794	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1000186	chr4:86976082-87000209	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv2422128	chr4:86976094-86979944	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv442912	chr4:86976094-86979944	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3490295	chr4:86976147-86980052	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3465629	chr4:86976258-86980057	Strong transcription Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3490303	chr4:86976270-86980064	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3490304	chr4:86976275-86980042	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3465630	chr4:86976289-86980018	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3490302	chr4:86976291-86979988	Strong transcription Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3465626	chr4:86976297-86980023	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3465628	chr4:86976314-86979979	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3490300	chr4:86976316-86980001	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv3490299	chr4:86976318-86980000	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv513143	chr4:86976342-86980058	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3465632	chr4:86976361-86979956	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3490296	chr4:86976374-86979952	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv3465633	chr4:86976375-86979955	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3490306	chr4:86976375-86979955	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv1011713	chr4:86976379-86991990	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv471766	chr4:86976387-86979952	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv15242	chr4:86976391-86980012	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv2830334	chr4:86976413-86979253	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv594760	chr4:86976413-86979927	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv514230	chr4:86976496-86979872	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv594762	chr4:86977277-86979252	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv594763	chr4:86977277-86979253	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv594764	chr4:86977277-86979358	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv594765	chr4:86977277-86979409	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
7	chr4:86961200-86979400	Weak transcription	Fetal Stomach	stomach
8	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
12	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:86975200-87003600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:86976000-86984200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:86976200-86987800	Weak transcription	Brain Germinal Matrix	brain
17	chr4:86976400-87000200	Weak transcription	Fetal Brain Female	brain
18	chr4:86976800-86986400	Weak transcription	Fetal Brain Male	brain
19	chr4:86977400-87003800	Weak transcription	Brain Anterior Caudate	brain
20	chr4:86978800-86988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:86979000-86979200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links