Variant report

Variant	rs114389587
Chromosome Location	chr9:100613783-100613784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100613782-100614557	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr9:100613478-100614224	H1-neurons	neurons:	n/a	n/a
3	SP1	chr9:100613541-100614161	H1-hESC	embryonic stem cell:	n/a	chr9:100613926-100613940
4	TCF12	chr9:100613780-100614051	H1-hESC	embryonic stem cell:	n/a	n/a
5	SUZ12	chr9:100612750-100618219	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
FOXE1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825000	chr9:100613121-100618319	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3330300	chr9:100613506-100618154	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100611600-100614000	Weak transcription	Pancreas	Pancrea
2	chr9:100613400-100613800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:100613400-100613800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr9:100613400-100613800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr9:100613400-100613800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:100613400-100613800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:100613400-100614000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:100613400-100614000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:100613400-100614000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
10	chr9:100613400-100614000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr9:100613400-100615400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:100613400-100615600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr9:100613400-100615600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
14	chr9:100613400-100615600	Bivalent Enhancer	Spleen	Spleen
15	chr9:100613400-100618800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:100613600-100613800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr9:100613600-100613800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:100613600-100613800	Flanking Bivalent TSS/Enh	NHEK	skin
19	chr9:100613600-100614000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:100613600-100614000	Bivalent/Poised TSS	HMEC	breast
21	chr9:100613600-100615000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr9:100613600-100615000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:100613600-100615000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr9:100613600-100615200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr9:100613600-100618000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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