Variant report

Variant	rs114524238
Chromosome Location	chr6:140385703-140385704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:140385660-140385810	HCPEpiC	choroid plexus:	n/a	n/a
2	CTCF	chr6:140385600-140385750	HCPEpiC	choroid plexus:	n/a	n/a
3	CTCF	chr6:140385620-140385770	Caco-2	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139692663..139698708-chr6:140381231..140386402,5	MCF-7	breast:
2	chr6:140385652..140387203-chr6:140390391..140391912,2	K562	blood:

Variant related genes	Relation type
ENSG00000236013	TF binding region
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv3396540	chr6:140384559-140386457	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv823852	chr6:140385359-140386386	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv823854	chr6:140385359-140392243	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140380000-140385800	Enhancers	NHDF-Ad	bronchial
2	chr6:140380600-140386400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:140381200-140385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:140382400-140386400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:140384200-140385800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:140384200-140391400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:140384400-140385800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:140384400-140385800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:140384400-140389600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:140384400-140391800	Weak transcription	Fetal Stomach	stomach
11	chr6:140384400-140391800	Weak transcription	Stomach Mucosa	stomach
12	chr6:140384400-140392800	Weak transcription	Aorta	Aorta
13	chr6:140384600-140391200	Weak transcription	Fetal Lung	lung
14	chr6:140384600-140392000	Weak transcription	HSMMtube	muscle
15	chr6:140384600-140392200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:140384600-140394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:140385000-140389800	Weak transcription	Osteobl	bone
18	chr6:140385200-140390000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:140385200-140391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:140385600-140385800	Enhancers	Adipose Nuclei	Adipose
21	chr6:140385600-140386000	Enhancers	Fetal Intestine Large	intestine
22	chr6:140385600-140386000	Enhancers	Fetal Intestine Small	intestine
23	chr6:140385600-140386000	Enhancers	Ovary	ovary
24	chr6:140385600-140390200	Weak transcription	NHLF	lung

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