Variant report
| Variant | rs1146077 |
|---|---|
| Chromosome Location | chr12:62483409-62483410 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1146078 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1146079 | 0.91[JPT][hapmap] |
| rs1146080 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1146081 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1146082 | 0.83[ASN][1000 genomes] |
| rs1146083 | 0.83[ASN][1000 genomes] |
| rs1245424 | 0.92[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs1663463 | 0.80[CHB][hapmap] |
| rs191551 | 0.82[JPT][hapmap] |
| rs348635 | 0.82[JPT][hapmap] |
| rs348638 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs348652 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs348654 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes] |
| rs348660 | 0.82[JPT][hapmap] |
| rs348661 | 0.81[JPT][hapmap] |
| rs348662 | 0.82[JPT][hapmap] |
| rs348663 | 0.82[JPT][hapmap] |
| rs348672 | 0.91[JPT][hapmap] |
| rs348675 | 0.90[JPT][hapmap] |
| rs348676 | 0.91[JPT][hapmap] |
| rs348679 | 0.91[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1146077 | MIP | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62482200-62484200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
