Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1146077	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1146078	0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146079	0.92[JPT][hapmap]
rs1146080	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1146082	0.88[ASN][1000 genomes]
rs1146083	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs1245424	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs191551	0.84[JPT][hapmap]
rs348635	0.84[JPT][hapmap]
rs348638	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs348652	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs348654	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs348660	0.82[JPT][hapmap]
rs348661	0.81[JPT][hapmap]
rs348662	0.84[JPT][hapmap]
rs348663	0.84[JPT][hapmap]
rs348672	0.92[JPT][hapmap]
rs348675	0.91[JPT][hapmap]
rs348676	0.92[JPT][hapmap]
rs348679	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62495600-62498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62496600-62498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62497000-62499600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:62497400-62498200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr12:62497400-62498400	Enhancers	Fetal Heart	heart
6	chr12:62497600-62498200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:62497600-62498200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:62497600-62498400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:62497600-62498800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:62497600-62500200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:62497600-62500200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:62497600-62500200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:62497800-62500600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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