Variant report

Variant	rs11465817
Chromosome Location	chr1:67721097-67721098
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1004819	0.91[CHB][hapmap];0.83[CHD][hapmap]
rs10889673	0.93[EUR][1000 genomes]
rs10889676	0.95[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs10889677	0.95[CEU][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs11465802	0.86[EUR][1000 genomes]
rs12030107	0.91[EUR][1000 genomes]
rs12031203	0.91[EUR][1000 genomes]
rs12567232	0.91[EUR][1000 genomes]
rs2180294	0.93[EUR][1000 genomes]
rs2201841	0.86[CEU][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs35380856	0.93[EUR][1000 genomes]
rs35427944	0.86[EUR][1000 genomes]
rs4655529	0.90[EUR][1000 genomes]
rs6665959	0.88[EUR][1000 genomes]
rs6686950	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1243	chr1:67700289-67745337	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11465817	STRA6	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67703800-67722000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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