Variant report

Variant	rs1147473
Chromosome Location	chr14:69782001-69782002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69780441..69783406-chr14:69787720..69789351,2	MCF-7	breast:
2	chr14:69780412..69782317-chr14:69783911..69786193,2	K562	blood:
3	chr14:69781606..69784523-chr14:69813636..69815679,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1147469	0.92[ASN][1000 genomes]
rs1147474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12232103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12232128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12232144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12232207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1303451	0.89[ASN][1000 genomes]
rs1378287	0.97[ASN][1000 genomes]
rs1947466	0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2185492	0.81[CHD][hapmap]
rs56184291	0.94[ASN][1000 genomes]
rs67740035	0.91[ASN][1000 genomes]
rs72625670	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72625671	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72625672	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72625673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72625680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8019454	0.97[ASN][1000 genomes]
rs9672058	0.96[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69777600-69783200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69779000-69786200	Enhancers	Left Ventricle	heart
3	chr14:69779600-69782200	Weak transcription	Fetal Intestine Small	intestine
4	chr14:69779600-69782200	Weak transcription	Spleen	Spleen
5	chr14:69779800-69783200	Weak transcription	Right Atrium	heart
6	chr14:69780200-69782800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:69780200-69783200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:69780200-69792600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:69780400-69783200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:69780400-69792600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:69780600-69782200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:69780800-69783600	Weak transcription	Osteobl	bone
13	chr14:69781200-69783200	Weak transcription	Ovary	ovary
14	chr14:69781400-69783000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:69781400-69783200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:69781400-69783200	Weak transcription	Right Ventricle	heart
17	chr14:69781400-69783600	Enhancers	A549	lung
18	chr14:69781600-69784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:69781600-69794800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:69781800-69782200	Enhancers	Hela-S3	cervix
21	chr14:69781800-69782400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr14:69781800-69782400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:69781800-69782400	Enhancers	HSMM	muscle
24	chr14:69781800-69782800	Enhancers	Brain Anterior Caudate	brain
25	chr14:69781800-69784200	Enhancers	NHDF-Ad	bronchial
26	chr14:69781800-69785800	Enhancers	NHLF	lung
27	chr14:69782000-69782200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:69782000-69782200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:69782000-69782200	Enhancers	Duodenum Mucosa	Duodenum
30	chr14:69782000-69782200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:69782000-69782400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:69782000-69782400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr14:69782000-69782400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr14:69782000-69782400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:69782000-69782600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:69782000-69783600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr14:69782000-69785000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:69782000-69785000	Enhancers	HSMMtube	muscle
39	chr14:69782000-69785400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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