Variant report

Variant	rs1147489
Chromosome Location	chr7:121679133-121679134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10488107	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1147498	0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12113399	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12530583	0.90[ASN][1000 genomes]
rs12538079	0.83[ASN][1000 genomes]
rs17616983	0.83[ASN][1000 genomes]
rs2052096	0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2109333	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2268077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2300199	0.90[ASN][1000 genomes]
rs4727938	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs57341517	0.85[ASN][1000 genomes]
rs59110694	0.90[ASN][1000 genomes]
rs59224714	0.85[ASN][1000 genomes]
rs59529453	0.82[ASN][1000 genomes]
rs59993706	0.87[ASN][1000 genomes]
rs60159595	0.90[ASN][1000 genomes]
rs72499551	0.90[ASN][1000 genomes]
rs73224332	0.83[ASN][1000 genomes]
rs73224336	0.83[ASN][1000 genomes]
rs73224339	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:121667800-121696200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:121668000-121696800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:121668200-121697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:121670600-121680600	Weak transcription	Fetal Brain Male	brain
11	chr7:121671200-121681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:121671200-121696800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:121672200-121697200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121672800-121679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121673200-121688000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:121673200-121688600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr7:121673600-121679400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121674000-121687800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:121675600-121688000	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr7:121677400-121688800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:121677800-121680400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:121678000-121685800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:121678200-121681200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:121678400-121701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:121678600-121680800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:121678800-121679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:121678800-121679600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr7:121678800-121679600	Enhancers	NH-A	brain
29	chr7:121678800-121680200	Enhancers	Hela-S3	cervix
30	chr7:121679000-121681200	Strong transcription	Fetal Brain Female	brain
31	chr7:121679000-121685400	Strong transcription	NHEK	skin

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