Variant report

Variant	rs10488107
Chromosome Location	chr7:121774649-121774650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:121774076-121774660	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:121773341-121774822	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121768771..121771920-chr7:121774258..121777646,3	K562	blood:

Variant related genes	Relation type
AASS	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1147489	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1147498	0.92[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs11977512	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12113399	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12530583	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12538079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17616983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052096	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2109333	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268077	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2300199	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727938	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57341517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59110694	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59224714	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59529453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59993706	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60159595	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61624073	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6948443	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6952698	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6954944	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72499551	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73224332	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73224336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73224339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226257	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73226277	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73226300	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7784030	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810763	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019004	chr7:121733372-121800380	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034553	chr7:121734934-121800380	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv608335	chr7:121749963-121779485	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10488107	TAS2R16	cis	parietal	SCAN

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121716000-121775600	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:121726000-121776000	Weak transcription	Fetal Stomach	stomach
3	chr7:121743800-121776200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:121744600-121783200	Weak transcription	Lung	lung
5	chr7:121744800-121775200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:121744800-121776800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:121747800-121775800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:121747800-121776200	Weak transcription	Fetal Brain Male	brain
9	chr7:121750000-121776600	Weak transcription	Psoas Muscle	Psoas
10	chr7:121750200-121775400	Weak transcription	Gastric	stomach
11	chr7:121750400-121775800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:121750800-121775400	Weak transcription	Small Intestine	intestine
13	chr7:121753800-121776200	Weak transcription	NH-A	brain
14	chr7:121755200-121776200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:121755200-121776800	Weak transcription	Aorta	Aorta
16	chr7:121756600-121776600	Weak transcription	Brain Angular Gyrus	brain
17	chr7:121756600-121783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121756600-121783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:121756800-121775400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:121756800-121776200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:121756800-121776200	Weak transcription	HUVEC	blood vessel
22	chr7:121756800-121776600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:121756800-121776800	Weak transcription	Brain Substantia Nigra	brain
24	chr7:121756800-121776800	Weak transcription	Right Ventricle	heart
25	chr7:121756800-121783000	Weak transcription	Fetal Intestine Large	intestine
26	chr7:121757200-121776000	Weak transcription	Brain Germinal Matrix	brain
27	chr7:121757200-121776000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:121757200-121776200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:121757200-121776400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:121757200-121776800	Weak transcription	Pancreas	Pancrea
31	chr7:121757800-121776200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:121758400-121776200	Weak transcription	Fetal Kidney	kidney
33	chr7:121758800-121776200	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:121758800-121776200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:121759200-121775600	Weak transcription	Brain Anterior Caudate	brain
36	chr7:121759600-121775600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:121763600-121781200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr7:121764000-121776200	Weak transcription	Adipose Nuclei	Adipose
39	chr7:121764600-121775600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:121765000-121776600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:121766200-121776600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:121766600-121775400	Weak transcription	Fetal Lung	lung
43	chr7:121766600-121776400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:121768400-121778000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:121768600-121776000	Weak transcription	Liver	Liver
46	chr7:121768600-121776800	Weak transcription	Left Ventricle	heart
47	chr7:121769200-121776600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:121770800-121775400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:121772400-121775800	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr7:121772400-121776200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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