Variant report

Variant	rs61624073
Chromosome Location	chr7:121811090-121811091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10488107	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11977512	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113399	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12530583	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12538079	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17616983	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2109333	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2268077	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2300199	0.82[ASN][1000 genomes]
rs4727938	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57341517	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59110694	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59224714	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59529453	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59993706	0.81[AMR][1000 genomes]
rs60159595	0.82[ASN][1000 genomes]
rs6948443	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6952698	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6954944	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72499551	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73224332	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73224336	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73224339	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73226257	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73226277	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226300	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784030	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7810763	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121797800-121811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:121810000-121811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:121810000-121811600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:121810200-121825800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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