Variant report

Variant	rs1147795
Chromosome Location	chr9:18497828-18497829
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10119114	1.00[CEU][hapmap]
rs10511637	1.00[CEU][hapmap]
rs11793923	0.88[YRI][hapmap]
rs12001288	1.00[CEU][hapmap]
rs1361533	1.00[CEU][hapmap]
rs1417037	0.84[YRI][hapmap]
rs1538999	0.96[YRI][hapmap]
rs16936777	1.00[CEU][hapmap]
rs17207339	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1888069	0.86[YRI][hapmap]
rs1891042	1.00[CEU][hapmap]
rs1891043	1.00[CEU][hapmap]
rs2153415	0.88[YRI][hapmap]
rs2153416	0.88[YRI][hapmap]
rs2277160	0.96[YRI][hapmap]
rs7044968	1.00[CEU][hapmap]
rs72688609	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18490400-18509400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:18491200-18498400	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:18492800-18498000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:18493800-18498600	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:18493800-18502400	Weak transcription	Ovary	ovary
6	chr9:18494000-18501000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:18494400-18500400	Genic enhancers	Osteobl	bone
8	chr9:18494600-18498800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:18494600-18498800	Weak transcription	Fetal Brain Male	brain
10	chr9:18495400-18499600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:18495400-18499800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:18495400-18500000	Weak transcription	NHEK	skin
13	chr9:18495400-18513200	Weak transcription	HUVEC	blood vessel
14	chr9:18495600-18499800	Weak transcription	HMEC	breast
15	chr9:18495800-18498200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:18496200-18498800	Enhancers	Fetal Heart	heart
17	chr9:18496800-18498200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:18496800-18498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:18496800-18507000	Weak transcription	NHLF	lung
20	chr9:18497000-18498000	Enhancers	Fetal Stomach	stomach
21	chr9:18497000-18498600	Weak transcription	HSMM	muscle
22	chr9:18497000-18498800	Weak transcription	NH-A	brain
23	chr9:18497000-18501000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:18497000-18501000	Enhancers	NHDF-Ad	bronchial
25	chr9:18497000-18502800	Enhancers	Fetal Lung	lung
26	chr9:18497200-18499000	Weak transcription	HSMMtube	muscle
27	chr9:18497200-18500000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:18497400-18498200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:18497600-18498200	Enhancers	Rectal Smooth Muscle	rectum

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