Variant report

Variant	rs1361533
Chromosome Location	chr9:18474570-18474571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10119114	1.00[CEU][hapmap]
rs10511637	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1147795	1.00[CEU][hapmap]
rs12001288	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16936777	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891042	1.00[CEU][hapmap]
rs1891043	1.00[CEU][hapmap]
rs60008508	1.00[EUR][1000 genomes]
rs7044968	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18471800-18475800	Enhancers	Hela-S3	cervix
2	chr9:18473000-18474600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr9:18473000-18475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:18473000-18475200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:18473000-18476800	Flanking Active TSS	HUVEC	blood vessel
6	chr9:18473000-18478000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:18473200-18474600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr9:18473200-18476400	Active TSS	NHLF	lung
9	chr9:18473200-18476800	Active TSS	NHDF-Ad	bronchial
10	chr9:18473200-18477800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:18473200-18477800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:18473400-18474800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr9:18473400-18475200	Active TSS	Fetal Heart	heart
14	chr9:18473400-18475400	Active TSS	Fetal Kidney	kidney
15	chr9:18473400-18475400	Active TSS	Stomach Smooth Muscle	stomach
16	chr9:18473400-18475800	Active TSS	Fetal Muscle Leg	muscle
17	chr9:18473400-18476000	Active TSS	Fetal Stomach	stomach
18	chr9:18473400-18476600	Active TSS	HSMMtube	muscle
19	chr9:18473600-18474600	Active TSS	Brain Hippocampus Middle	brain
20	chr9:18473600-18474600	Active TSS	Right Atrium	heart
21	chr9:18473600-18475000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:18473600-18475000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr9:18473600-18475200	Active TSS	Fetal Muscle Trunk	muscle
24	chr9:18473600-18475200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:18473600-18475200	Active TSS	Right Ventricle	heart
26	chr9:18473600-18476200	Active TSS	NH-A	brain
27	chr9:18473800-18474600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:18473800-18474600	Flanking Active TSS	NHEK	skin
29	chr9:18473800-18475000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
30	chr9:18473800-18475400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr9:18473800-18476200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:18473800-18477000	Active TSS	HSMM	muscle
33	chr9:18474000-18474800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:18474000-18475000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:18474000-18475400	Active TSS	Aorta	Aorta
36	chr9:18474000-18475400	Active TSS	Rectal Smooth Muscle	rectum
37	chr9:18474000-18476200	Active TSS	Muscle Satellite Cultured Cells	--
38	chr9:18474200-18474600	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr9:18474200-18474600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr9:18474200-18474800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr9:18474200-18475000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr9:18474200-18475000	Flanking Active TSS	Fetal Brain Female	brain
43	chr9:18474200-18475000	Enhancers	Ovary	ovary
44	chr9:18474200-18475000	Flanking Active TSS	HMEC	breast
45	chr9:18474200-18478800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:18474400-18474600	Active TSS	H1 Cell Line	embryonic stem cell
47	chr9:18474400-18474600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:18474400-18474600	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr9:18474400-18474600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:18474400-18474600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links