Variant report

Variant	rs1148389
Chromosome Location	chr19:37297162-37297163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37288230..37290127-chr19:37296601..37299448,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267254	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1148385	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1148392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227565	0.89[AFR][1000 genomes]
rs1227576	0.89[AFR][1000 genomes]
rs1227795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227808	0.83[AMR][1000 genomes]
rs1227813	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227817	0.83[AMR][1000 genomes]
rs1227868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1302669	0.82[AFR][1000 genomes]
rs1623946	0.89[AFR][1000 genomes]
rs1631197	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1643423	0.89[AFR][1000 genomes]
rs1673076	0.85[AFR][1000 genomes]
rs1726720	0.86[AFR][1000 genomes]
rs28418630	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs569886	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv911650	chr19:37241141-37331614	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
19	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
20	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37287400-37327400	ZNF genes & repeats	Liver	Liver
2	chr19:37289000-37309200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:37289200-37300600	Weak transcription	Right Ventricle	heart
4	chr19:37289200-37301600	Weak transcription	HSMMtube	muscle
5	chr19:37289200-37327000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:37289400-37327600	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:37289600-37301000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:37289600-37302200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr19:37289600-37302200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:37289600-37327400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:37289600-37327400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:37289800-37297600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:37290000-37301800	Weak transcription	Fetal Heart	heart
14	chr19:37290800-37297200	Weak transcription	Stomach Mucosa	stomach
15	chr19:37291000-37298200	Weak transcription	NHDF-Ad	bronchial
16	chr19:37291600-37298800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:37292000-37303400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:37292000-37328400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:37292200-37299400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:37292200-37309400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:37292600-37298200	Weak transcription	Brain Angular Gyrus	brain
22	chr19:37292800-37297400	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr19:37293400-37302200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:37293400-37325600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr19:37293600-37297600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
26	chr19:37293600-37325000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr19:37294000-37304200	Weak transcription	HSMM	muscle
28	chr19:37294400-37297400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37294800-37303800	Weak transcription	Osteobl	bone
30	chr19:37295000-37297400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr19:37295000-37327200	ZNF genes & repeats	Fetal Lung	lung
32	chr19:37295600-37324800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
33	chr19:37295600-37327200	ZNF genes & repeats	Fetal Brain Female	brain
34	chr19:37295800-37298200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr19:37295800-37307600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr19:37296000-37297200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:37296000-37299800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr19:37296200-37305200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr19:37296400-37297200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr19:37296400-37297400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr19:37296400-37297400	ZNF genes & repeats	Ovary	ovary
42	chr19:37296400-37300000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr19:37296400-37300800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr19:37296400-37308200	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr19:37296600-37297400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr19:37296600-37298000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr19:37296600-37299400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr19:37296600-37299800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr19:37296800-37297800	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr19:37297000-37297200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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