Variant report

Variant	rs11484638
Chromosome Location	chr1:173433052-173433053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173431852..173434200-chr1:173446152..173447962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10912620	0.95[AFR][1000 genomes]
rs12058528	0.81[AFR][1000 genomes]
rs12061817	0.95[AFR][1000 genomes]
rs12088949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089119	0.93[AFR][1000 genomes]
rs12092458	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6656413	0.93[AFR][1000 genomes]
rs6664925	0.91[AMR][1000 genomes]
rs7529099	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173419000-173439000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:173421400-173434000	Weak transcription	Psoas Muscle	Psoas
3	chr1:173423800-173433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:173423800-173436600	Weak transcription	NHDF-Ad	bronchial
5	chr1:173423800-173442400	Weak transcription	NH-A	brain
6	chr1:173425200-173442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:173429400-173433600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:173429400-173439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:173429600-173433400	Weak transcription	HMEC	breast
10	chr1:173430400-173435000	Weak transcription	Brain Angular Gyrus	brain
11	chr1:173430400-173437200	Weak transcription	NHLF	lung
12	chr1:173430400-173437800	Weak transcription	Esophagus	oesophagus
13	chr1:173430400-173439200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:173430400-173442400	Weak transcription	Gastric	stomach
15	chr1:173430400-173442800	Weak transcription	Pancreas	Pancrea
16	chr1:173430400-173444400	Weak transcription	Right Ventricle	heart
17	chr1:173430600-173433200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:173430600-173438000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:173430600-173438800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:173430600-173439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:173430600-173439800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:173430600-173442600	Weak transcription	Aorta	Aorta
23	chr1:173430600-173443200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:173430600-173444400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:173430800-173433400	Weak transcription	Thymus	Thymus
26	chr1:173430800-173437800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:173430800-173439400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:173430800-173439800	Weak transcription	Fetal Stomach	stomach
29	chr1:173430800-173445000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr1:173431000-173433200	Weak transcription	Fetal Intestine Large	intestine
31	chr1:173431000-173433400	Active TSS	HSMMtube	muscle
32	chr1:173431000-173433600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:173431000-173433800	Weak transcription	Ovary	ovary
34	chr1:173431000-173435400	Weak transcription	Adipose Nuclei	Adipose
35	chr1:173431000-173436400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:173431000-173436600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:173431000-173436800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:173431000-173436800	Weak transcription	Osteobl	bone
39	chr1:173431000-173438600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:173431000-173438800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr1:173431000-173439000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:173431000-173439200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr1:173431000-173439600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:173431000-173439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:173431000-173439600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr1:173431000-173439800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr1:173431000-173439800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:173431000-173439800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:173431000-173442400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:173431000-173442400	Weak transcription	Rectal Mucosa Donor 31	rectum

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