Variant report

Variant	rs6664925
Chromosome Location	chr1:173462410-173462411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173461354..173463510-chr1:173469869..173472477,2	K562	blood:
2	chr1:173445437..173448138-chr1:173461010..173464906,4	MCF-7	breast:
3	chr1:173459418..173462700-chr1:173792313..173795552,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120334	Chromatin interaction
ENSG00000117593	Chromatin interaction
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10912627	1.00[EUR][1000 genomes]
rs10912640	1.00[EUR][1000 genomes]
rs11484638	0.91[AMR][1000 genomes]
rs12060076	1.00[EUR][1000 genomes]
rs12077267	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12078424	1.00[EUR][1000 genomes]
rs12078577	1.00[EUR][1000 genomes]
rs12080868	1.00[EUR][1000 genomes]
rs12081730	1.00[EUR][1000 genomes]
rs12082116	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085144	0.80[AFR][1000 genomes]
rs12088949	0.91[AMR][1000 genomes]
rs12091134	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461015	1.00[EUR][1000 genomes]
rs16846096	1.00[EUR][1000 genomes]
rs16846131	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846220	1.00[EUR][1000 genomes]
rs2901746	1.00[EUR][1000 genomes]
rs74129110	1.00[EUR][1000 genomes]
rs7529099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173456800-173464600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:173457200-173466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:173457200-173466800	Weak transcription	Gastric	stomach
5	chr1:173457400-173463800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:173457600-173464400	Weak transcription	HepG2	liver
7	chr1:173457600-173466000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:173457800-173465000	Weak transcription	Spleen	Spleen
9	chr1:173458400-173464400	Weak transcription	Hela-S3	cervix
10	chr1:173458600-173462600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:173458600-173463000	Weak transcription	Psoas Muscle	Psoas
12	chr1:173458600-173467200	Weak transcription	HSMMtube	muscle
13	chr1:173458600-173468400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:173458600-173475600	Weak transcription	Fetal Kidney	kidney
15	chr1:173458600-173476600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:173458800-173463200	Weak transcription	Dnd41	blood
17	chr1:173458800-173464800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:173458800-173465000	Weak transcription	K562	blood
19	chr1:173458800-173466200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:173458800-173470400	Weak transcription	Ovary	ovary
21	chr1:173459000-173463000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr1:173459000-173463200	Weak transcription	Aorta	Aorta
23	chr1:173459000-173463600	Weak transcription	Brain Angular Gyrus	brain
24	chr1:173459200-173462800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:173459200-173464200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:173459200-173466000	Weak transcription	Adipose Nuclei	Adipose
27	chr1:173459400-173462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:173459400-173462800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:173459400-173463400	Weak transcription	HSMM	muscle
30	chr1:173459400-173474000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:173459400-173475400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:173459600-173465200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:173459600-173470000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:173459800-173469200	Weak transcription	Left Ventricle	heart
35	chr1:173460000-173464600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:173460800-173462600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:173461800-173463000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:173461800-173470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:173462200-173464600	Weak transcription	Liver	Liver

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