Variant report
| Variant | rs2901746 |
|---|---|
| Chromosome Location | chr1:173480972-173480973 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:173479153..173481697-chr1:173835838..173838475,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234741 | Chromatin interaction |
| ENSG00000185278 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10912627 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10912640 | 1.00[EUR][1000 genomes] |
| rs12060076 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12060658 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12077267 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12078424 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12078577 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12080868 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12081730 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12082116 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12085144 | 0.83[AMR][1000 genomes] |
| rs12091134 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1461015 | 1.00[EUR][1000 genomes] |
| rs16846096 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16846131 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16846220 | 1.00[EUR][1000 genomes] |
| rs6664925 | 1.00[EUR][1000 genomes] |
| rs74129110 | 1.00[EUR][1000 genomes] |
| rs7529099 | 1.00[EUR][1000 genomes] |
| rs7551131 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831915 | chr1:173268424-173482157 | Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
