Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr1:173523677-173524068	SK-N-SH	brain:	n/a	n/a
2	FOS	chr1:173523701-173524069	MCF10A-Er-Src	breast:	n/a	chr1:173523886-173523897
3	JUN	chr1:173523654-173523902	K562	blood:	n/a	n/a
4	STAT3	chr1:173523700-173524053	MCF10A-Er-Src	breast:	n/a	n/a
5	FOSL2	chr1:173523703-173524116	SK-N-SH	brain:	n/a	n/a
6	STAT3	chr1:173523686-173524092	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr1:173523692-173524044	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr1:173523705-173524068	MCF10A-Er-Src	breast:	n/a	chr1:173523886-173523897
9	FOS	chr1:173523701-173524075	MCF10A-Er-Src	breast:	n/a	chr1:173523886-173523897
10	JUND	chr1:173523568-173524208	HCT-116	colon:	n/a	chr1:173523886-173523897 chr1:173524155-173524167
11	FOS	chr1:173523701-173524068	MCF10A-Er-Src	breast:	n/a	chr1:173523886-173523897
12	JUND	chr1:173523696-173524062	Hela-S3	cervix:	n/a	chr1:173523886-173523897
13	SP1	chr1:173523544-173524167	HCT-116	colon:	n/a	n/a
14	JUN	chr1:173523716-173524063	HUVEC	blood vessel:	n/a	n/a
15	FOS	chr1:173523695-173524097	HUVEC	blood vessel:	n/a	chr1:173523886-173523897
16	STAT3	chr1:173523718-173524054	MCF10A-Er-Src	breast:	n/a	n/a
17	FOSL1	chr1:173523570-173524177	HCT-116	colon:	n/a	chr1:173524155-173524167

Variant related genes	Relation type
ENSG00000238272	TF binding region

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[GIH][hapmap]
rs10737302	1.00[GIH][hapmap]
rs10912627	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912628	0.89[AMR][1000 genomes]
rs10912629	0.89[AMR][1000 genomes]
rs10912631	0.89[AMR][1000 genomes]
rs10912640	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	1.00[GIH][hapmap]
rs12060076	1.00[EUR][1000 genomes]
rs12065033	1.00[GIH][hapmap]
rs12077267	1.00[EUR][1000 genomes]
rs12078424	1.00[EUR][1000 genomes]
rs12078577	1.00[EUR][1000 genomes]
rs12080868	1.00[EUR][1000 genomes]
rs12081220	1.00[GIH][hapmap]
rs12081730	1.00[EUR][1000 genomes]
rs12082116	1.00[EUR][1000 genomes]
rs12087885	1.00[GIH][hapmap]
rs12091134	1.00[EUR][1000 genomes]
rs1461015	0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461021	0.83[AMR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846052	1.00[GIH][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes]
rs16846096	1.00[EUR][1000 genomes]
rs16846131	1.00[EUR][1000 genomes]
rs16846173	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap]
rs2013387	1.00[GIH][hapmap]
rs2901746	1.00[EUR][1000 genomes]
rs4354572	1.00[GIH][hapmap]
rs4456125	0.89[AMR][1000 genomes]
rs4494170	1.00[GIH][hapmap]
rs4564180	0.89[AMR][1000 genomes]
rs4916221	1.00[GIH][hapmap]
rs6425247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664925	1.00[EUR][1000 genomes]
rs6678784	1.00[GIH][hapmap]
rs74129110	1.00[EUR][1000 genomes]
rs7529099	1.00[EUR][1000 genomes]
rs7551131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:173523000-173523800	Enhancers	K562	blood
3	chr1:173523200-173524400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:173523200-173525200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:173523200-173525400	Enhancers	HMEC	breast
6	chr1:173523200-173525400	Enhancers	NHEK	skin
7	chr1:173523200-173525600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173523200-173525600	Enhancers	Hela-S3	cervix
9	chr1:173523400-173524000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:173523400-173525400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:173523400-173525400	Enhancers	HUVEC	blood vessel
12	chr1:173523600-173529400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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