Variant report

Variant	rs12065033
Chromosome Location	chr1:173579034-173579035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173576948..173579890-chr1:173793807..173795383,2	K562	blood:
2	chr1:173445940..173448000-chr1:173576966..173579271,3	K562	blood:

Variant related genes	Relation type
ENSG00000120334	Chromatin interaction
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10081990	1.00[EUR][1000 genomes]
rs10082342	1.00[CHD][hapmap]
rs10127525	0.82[AMR][1000 genomes]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[ASW][hapmap];1.00[GIH][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10158663	1.00[EUR][1000 genomes]
rs10737302	1.00[GIH][hapmap]
rs10912654	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10912657	0.82[AMR][1000 genomes]
rs10912658	1.00[AMR][1000 genomes]
rs10912659	0.82[AMR][1000 genomes]
rs10912677	1.00[EUR][1000 genomes]
rs10912678	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912680	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912682	1.00[EUR][1000 genomes]
rs11487392	1.00[EUR][1000 genomes]
rs12058218	0.80[AFR][1000 genomes]
rs12059066	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059068	1.00[ASW][hapmap];1.00[GIH][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059157	0.82[AMR][1000 genomes]
rs12066494	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12067571	1.00[EUR][1000 genomes]
rs12073601	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12074044	0.80[AFR][1000 genomes]
rs12074150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076223	0.82[AMR][1000 genomes]
rs12079027	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12079161	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12080389	1.00[EUR][1000 genomes]
rs12081220	1.00[GIH][hapmap]
rs12083423	1.00[EUR][1000 genomes]
rs12087885	1.00[ASW][hapmap];1.00[GIH][hapmap];0.82[AMR][1000 genomes]
rs12087918	0.82[AMR][1000 genomes]
rs12091486	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12093198	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12094130	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12095090	1.00[EUR][1000 genomes]
rs12096136	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12098124	1.00[EUR][1000 genomes]
rs12164490	0.82[AMR][1000 genomes]
rs13375322	0.82[AMR][1000 genomes]
rs13375555	1.00[EUR][1000 genomes]
rs1461016	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1461017	0.82[AMR][1000 genomes]
rs1461018	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846052	1.00[GIH][hapmap]
rs16846173	1.00[GIH][hapmap]
rs16846220	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap]
rs16846420	0.83[TSI][hapmap]
rs1903411	0.82[AMR][1000 genomes]
rs2013387	0.88[ASW][hapmap];1.00[GIH][hapmap]
rs2180327	1.00[CHD][hapmap]
rs28767926	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34853351	1.00[CHD][hapmap]
rs4354572	1.00[GIH][hapmap]
rs4494170	1.00[GIH][hapmap]
rs4916221	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs58045923	0.80[AFR][1000 genomes]
rs59054917	0.80[AFR][1000 genomes]
rs6425251	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs6425257	1.00[EUR][1000 genomes]
rs6658217	0.83[EUR][1000 genomes]
rs6663880	1.00[EUR][1000 genomes]
rs6666475	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6668650	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6670574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675955	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6677292	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6678784	1.00[ASW][hapmap];1.00[GIH][hapmap];0.82[AMR][1000 genomes]
rs6682615	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6690869	0.82[AMR][1000 genomes]
rs6692452	1.00[TSI][hapmap]
rs6700712	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6702485	1.00[EUR][1000 genomes]
rs727925	0.96[AMR][1000 genomes]
rs73033123	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7418622	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7518601	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7536773	1.00[TSI][hapmap]
rs7544583	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7550036	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9286887	1.00[TSI][hapmap]
rs9425415	1.00[TSI][hapmap]
rs9803675	0.82[AMR][1000 genomes]
rs9803677	0.82[AMR][1000 genomes]
rs9970633	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173573400-173586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:173575600-173580600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:173578200-173580800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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