Variant report

Variant	rs6668650
Chromosome Location	chr1:173610994-173610995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173609962..173612745-chr1:173617170..173619375,2	K562	blood:
2	chr1:173605538..173609079-chr1:173609597..173613461,5	K562	blood:
3	chr1:173605287..173609267-chr1:173609597..173614362,5	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10127525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912658	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12058218	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12059066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065033	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074044	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12074150	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12075335	0.95[AMR][1000 genomes]
rs12075679	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081220	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083635	0.95[AMR][1000 genomes]
rs12084685	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089398	1.00[EUR][1000 genomes]
rs12091486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094752	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164630	0.84[AMR][1000 genomes]
rs13375322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846278	1.00[EUR][1000 genomes]
rs16846288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903410	0.95[AMR][1000 genomes]
rs1903411	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2013387	1.00[EUR][1000 genomes]
rs28767926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652225	1.00[EUR][1000 genomes]
rs56036053	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56157228	0.89[AMR][1000 genomes]
rs57609710	1.00[EUR][1000 genomes]
rs58045923	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59054917	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554547	1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6666475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670574	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6675955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686370	1.00[EUR][1000 genomes]
rs6690869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73033123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033131	0.95[AMR][1000 genomes]
rs7518601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537369	1.00[EUR][1000 genomes]
rs9803675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415007	chr1:173606736-173611929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173606800-173611400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:173609000-173625000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:173610000-173611200	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr1:173610200-173611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:173610200-173611600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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