Variant report

Variant	rs12075335
Chromosome Location	chr1:173623372-173623373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10127525	0.95[AMR][1000 genomes]
rs10158034	0.95[AMR][1000 genomes]
rs10912654	0.95[AMR][1000 genomes]
rs10912657	0.95[AMR][1000 genomes]
rs10912659	0.95[AMR][1000 genomes]
rs12058218	0.90[AMR][1000 genomes]
rs12059066	0.95[AMR][1000 genomes]
rs12059068	0.95[AMR][1000 genomes]
rs12059157	0.95[AMR][1000 genomes]
rs12066494	0.95[AMR][1000 genomes]
rs12068135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074044	0.90[AMR][1000 genomes]
rs12075679	0.89[AMR][1000 genomes]
rs12076223	0.95[AMR][1000 genomes]
rs12079027	0.95[AMR][1000 genomes]
rs12079161	0.95[AMR][1000 genomes]
rs12081220	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12083635	0.90[AMR][1000 genomes]
rs12084685	0.89[AMR][1000 genomes]
rs12087885	0.95[AMR][1000 genomes]
rs12087918	0.95[AMR][1000 genomes]
rs12091486	0.95[AMR][1000 genomes]
rs12093198	0.95[AMR][1000 genomes]
rs12094752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096136	0.95[AMR][1000 genomes]
rs12164490	0.95[AMR][1000 genomes]
rs13375322	0.95[AMR][1000 genomes]
rs1461016	0.95[AMR][1000 genomes]
rs1461017	0.95[AMR][1000 genomes]
rs1461018	0.95[AMR][1000 genomes]
rs16846288	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1903410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1903411	0.95[AMR][1000 genomes]
rs28767926	0.95[AMR][1000 genomes]
rs56036053	0.84[AMR][1000 genomes]
rs56157228	0.84[AMR][1000 genomes]
rs57609710	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58045923	0.86[AMR][1000 genomes]
rs59054917	0.90[AMR][1000 genomes]
rs6666475	0.95[AMR][1000 genomes]
rs6668650	0.95[AMR][1000 genomes]
rs6675955	0.95[AMR][1000 genomes]
rs6677292	0.95[AMR][1000 genomes]
rs6678784	0.95[AMR][1000 genomes]
rs6682615	0.95[AMR][1000 genomes]
rs6686370	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6690869	0.95[AMR][1000 genomes]
rs6700712	0.95[AMR][1000 genomes]
rs727925	0.82[AMR][1000 genomes]
rs73033123	0.95[AMR][1000 genomes]
rs73033131	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518601	0.95[AMR][1000 genomes]
rs9803675	0.95[AMR][1000 genomes]
rs9803677	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:173609000-173625000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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