Variant report

Variant	rs16846288
Chromosome Location	chr1:173571461-173571462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10127525	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158034	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912658	1.00[EUR][1000 genomes]
rs10912659	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12058218	0.80[AMR][1000 genomes]
rs12059066	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059157	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074044	0.80[AMR][1000 genomes]
rs12075335	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12075679	1.00[EUR][1000 genomes]
rs12076223	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079027	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081220	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083635	0.80[AMR][1000 genomes]
rs12084685	1.00[EUR][1000 genomes]
rs12087885	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087918	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089398	1.00[EUR][1000 genomes]
rs12091486	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093198	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094752	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096136	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164490	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375322	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461016	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461017	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461018	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846278	1.00[EUR][1000 genomes]
rs1903410	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1903411	0.84[AMR][1000 genomes]
rs2013387	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28767926	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56036053	1.00[EUR][1000 genomes]
rs57609710	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58045923	1.00[EUR][1000 genomes]
rs59054917	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61554547	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6666475	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668650	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675955	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677292	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678784	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682615	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686370	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690869	0.84[AMR][1000 genomes]
rs6700712	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73033123	0.84[AMR][1000 genomes]
rs73033131	0.89[AMR][1000 genomes]
rs7518601	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537369	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803675	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803677	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173570600-173573000	Enhancers	HMEC	breast
2	chr1:173570800-173572000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:173570800-173572400	Enhancers	K562	blood
4	chr1:173571000-173572000	Enhancers	Ovary	ovary
5	chr1:173571000-173572000	Enhancers	Spleen	Spleen

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