Variant report

Variant	rs12089398
Chromosome Location	chr1:173557018-173557019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173555448..173558031-chr1:173683873..173685829,2	MCF-7	breast:
2	chr1:173554073..173555924-chr1:173556865..173558651,2	MCF-7	breast:
3	chr1:173555092..173557782-chr1:173564297..173566456,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000076321	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10127525	1.00[EUR][1000 genomes]
rs10158034	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10489892	0.87[YRI][hapmap]
rs10489893	0.86[LWK][hapmap]
rs10912652	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912653	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10912654	1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	1.00[EUR][1000 genomes]
rs10912658	1.00[EUR][1000 genomes]
rs10912659	1.00[EUR][1000 genomes]
rs10912680	1.00[MEX][hapmap]
rs11484566	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12059066	1.00[EUR][1000 genomes]
rs12059068	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12059157	1.00[EUR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	1.00[EUR][1000 genomes]
rs12067795	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12068135	1.00[EUR][1000 genomes]
rs12075679	1.00[EUR][1000 genomes]
rs12076223	1.00[EUR][1000 genomes]
rs12079027	1.00[EUR][1000 genomes]
rs12079161	1.00[EUR][1000 genomes]
rs12081137	0.84[LWK][hapmap];0.87[YRI][hapmap]
rs12081220	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12083064	0.84[LWK][hapmap];0.87[YRI][hapmap]
rs12084685	1.00[EUR][1000 genomes]
rs12086687	0.86[LWK][hapmap]
rs12087885	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12087918	1.00[EUR][1000 genomes]
rs12091486	1.00[EUR][1000 genomes]
rs12093198	1.00[EUR][1000 genomes]
rs12094130	1.00[MEX][hapmap]
rs12094752	1.00[EUR][1000 genomes]
rs12096136	1.00[EUR][1000 genomes]
rs12164490	1.00[EUR][1000 genomes]
rs13375322	1.00[EUR][1000 genomes]
rs1461016	1.00[EUR][1000 genomes]
rs1461017	1.00[EUR][1000 genomes]
rs1461018	1.00[EUR][1000 genomes]
rs1570385	0.86[LWK][hapmap]
rs16846278	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846288	1.00[EUR][1000 genomes]
rs2013387	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28767926	1.00[EUR][1000 genomes]
rs56036053	1.00[EUR][1000 genomes]
rs57609710	1.00[EUR][1000 genomes]
rs58045923	1.00[EUR][1000 genomes]
rs59054917	1.00[EUR][1000 genomes]
rs61554547	1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6666475	1.00[EUR][1000 genomes]
rs6668650	1.00[EUR][1000 genomes]
rs6675955	1.00[EUR][1000 genomes]
rs6677292	1.00[EUR][1000 genomes]
rs6678784	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6682615	1.00[EUR][1000 genomes]
rs6686370	1.00[EUR][1000 genomes]
rs6692452	1.00[MEX][hapmap]
rs6700712	1.00[EUR][1000 genomes]
rs7518601	1.00[EUR][1000 genomes]
rs7536773	1.00[MEX][hapmap]
rs7537369	1.00[EUR][1000 genomes]
rs7544583	1.00[MEX][hapmap]
rs7550036	1.00[MEX][hapmap]
rs9286887	1.00[MEX][hapmap]
rs9803675	1.00[EUR][1000 genomes]
rs9803677	1.00[EUR][1000 genomes]
rs9970633	1.00[MEX][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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