Variant report

Variant	rs10912658
Chromosome Location	chr1:173625294-173625295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10127525	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158034	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912652	1.00[EUR][1000 genomes]
rs10912653	1.00[EUR][1000 genomes]
rs10912654	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912655	1.00[EUR][1000 genomes]
rs10912657	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912659	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11484566	1.00[EUR][1000 genomes]
rs12059066	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059068	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059157	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065033	1.00[AMR][1000 genomes]
rs12066066	1.00[EUR][1000 genomes]
rs12066494	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067795	1.00[EUR][1000 genomes]
rs12068135	1.00[EUR][1000 genomes]
rs12074150	1.00[AMR][1000 genomes]
rs12075679	1.00[EUR][1000 genomes]
rs12076223	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079027	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079161	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081220	1.00[EUR][1000 genomes]
rs12084685	1.00[EUR][1000 genomes]
rs12087885	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087918	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089398	1.00[EUR][1000 genomes]
rs12091486	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093198	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094752	1.00[EUR][1000 genomes]
rs12096136	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375322	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461016	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461017	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461018	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846278	1.00[EUR][1000 genomes]
rs16846288	1.00[EUR][1000 genomes]
rs1903411	0.82[AMR][1000 genomes]
rs2013387	1.00[EUR][1000 genomes]
rs28767926	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652225	1.00[EUR][1000 genomes]
rs56036053	1.00[EUR][1000 genomes]
rs57609710	1.00[EUR][1000 genomes]
rs58045923	1.00[EUR][1000 genomes]
rs59054917	1.00[EUR][1000 genomes]
rs61554547	1.00[EUR][1000 genomes]
rs6425250	1.00[EUR][1000 genomes]
rs6666475	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6668650	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670574	1.00[AMR][1000 genomes]
rs6675955	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677292	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678784	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682615	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686370	1.00[EUR][1000 genomes]
rs6690869	0.82[AMR][1000 genomes]
rs6700712	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727925	0.96[AMR][1000 genomes]
rs73033123	0.82[AMR][1000 genomes]
rs7518601	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537369	1.00[EUR][1000 genomes]
rs9803675	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9803677	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:173623600-173637400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:173624400-173625600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:173624600-173626400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:173624800-173625800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr1:173624800-173626000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr1:173624800-173626000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:173624800-173626200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:173624800-173626400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr1:173625000-173625400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
11	chr1:173625000-173625400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:173625000-173625400	ZNF genes & repeats	Fetal Brain Female	brain
13	chr1:173625000-173625400	ZNF genes & repeats	Ovary	ovary
14	chr1:173625000-173625600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:173625000-173625800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:173625200-173626600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:173625200-173627000	Weak transcription	Fetal Kidney	kidney

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