Variant report

Variant	rs12074150
Chromosome Location	chr1:173616907-173616908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173613329..173616073-chr1:173616452..173618767,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10081990	1.00[EUR][1000 genomes]
rs10127525	0.82[AMR][1000 genomes]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10158663	1.00[EUR][1000 genomes]
rs10912654	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10912657	0.82[AMR][1000 genomes]
rs10912658	1.00[AMR][1000 genomes]
rs10912659	0.82[AMR][1000 genomes]
rs10912677	1.00[EUR][1000 genomes]
rs10912678	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912680	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912682	1.00[EUR][1000 genomes]
rs11487392	1.00[EUR][1000 genomes]
rs12058218	0.82[AFR][1000 genomes]
rs12059066	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059068	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059157	0.82[AMR][1000 genomes]
rs12065033	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066494	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12067571	1.00[EUR][1000 genomes]
rs12073601	0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12074044	0.82[AFR][1000 genomes]
rs12076223	0.82[AMR][1000 genomes]
rs12079027	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12079161	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12080389	1.00[EUR][1000 genomes]
rs12081220	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12083423	1.00[EUR][1000 genomes]
rs12087885	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs12087918	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12091486	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12093198	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12094130	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12095090	1.00[EUR][1000 genomes]
rs12096136	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12096832	1.00[TSI][hapmap]
rs12098124	1.00[EUR][1000 genomes]
rs12164490	0.82[AMR][1000 genomes]
rs13375322	0.82[AMR][1000 genomes]
rs13375555	1.00[EUR][1000 genomes]
rs1461016	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1461017	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1461018	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846052	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs16846173	1.00[GIH][hapmap]
rs16846220	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap]
rs16846420	0.83[TSI][hapmap]
rs1903411	0.82[AMR][1000 genomes]
rs2013387	0.88[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs28578576	1.00[TSI][hapmap]
rs28767926	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4354572	1.00[GIH][hapmap]
rs4916221	1.00[GIH][hapmap]
rs58045923	0.82[AFR][1000 genomes]
rs59054917	0.82[AFR][1000 genomes]
rs6425251	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs6425257	1.00[EUR][1000 genomes]
rs6658217	0.83[EUR][1000 genomes]
rs6663880	1.00[EUR][1000 genomes]
rs6666475	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6668650	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6670574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675762	1.00[TSI][hapmap]
rs6675955	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6677292	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6678784	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs6682615	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6690869	0.82[AMR][1000 genomes]
rs6691327	1.00[TSI][hapmap]
rs6692452	1.00[TSI][hapmap]
rs6700712	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6702485	1.00[EUR][1000 genomes]
rs727925	0.96[AMR][1000 genomes]
rs73033123	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7518601	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7536773	1.00[TSI][hapmap]
rs7544583	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7550036	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7552840	1.00[TSI][hapmap]
rs9286887	1.00[TSI][hapmap]
rs9286890	1.00[TSI][hapmap]
rs9425415	1.00[TSI][hapmap]
rs9425752	1.00[TSI][hapmap]
rs9803675	0.82[AMR][1000 genomes]
rs9803677	0.82[AMR][1000 genomes]
rs9970633	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:173607800-173624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:173609000-173625000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:173611200-173619000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:173613600-173629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links