Variant report

Variant	rs6670574
Chromosome Location	chr1:173607770-173607771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173605287..173609267-chr1:173609597..173614362,5	K562	blood:
2	chr1:173605538..173609079-chr1:173609597..173613461,5	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10081990	1.00[EUR][1000 genomes]
rs10127525	0.82[AMR][1000 genomes]
rs10157668	1.00[GIH][hapmap]
rs10158034	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10158663	1.00[EUR][1000 genomes]
rs10737302	1.00[GIH][hapmap]
rs10912654	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10912657	0.82[AMR][1000 genomes]
rs10912658	1.00[AMR][1000 genomes]
rs10912659	0.82[AMR][1000 genomes]
rs10912677	1.00[EUR][1000 genomes]
rs10912678	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912680	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10912682	1.00[EUR][1000 genomes]
rs11487392	1.00[EUR][1000 genomes]
rs12058218	0.82[AFR][1000 genomes]
rs12059066	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059068	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12059157	0.82[AMR][1000 genomes]
rs12065033	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066494	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12067571	1.00[EUR][1000 genomes]
rs12073601	0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12074044	0.82[AFR][1000 genomes]
rs12074150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076223	0.82[AMR][1000 genomes]
rs12079027	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12079161	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12080389	1.00[EUR][1000 genomes]
rs12081220	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12083423	1.00[EUR][1000 genomes]
rs12087885	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs12087918	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12091486	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12093198	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12094130	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12095090	1.00[EUR][1000 genomes]
rs12096136	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12096832	1.00[TSI][hapmap]
rs12098124	1.00[EUR][1000 genomes]
rs12164490	0.82[AMR][1000 genomes]
rs13375322	0.82[AMR][1000 genomes]
rs13375555	1.00[EUR][1000 genomes]
rs1461016	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1461017	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1461018	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16828416	1.00[GIH][hapmap]
rs16846052	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs16846173	1.00[GIH][hapmap]
rs16846220	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap]
rs16846420	0.83[TSI][hapmap]
rs1903411	0.82[AMR][1000 genomes]
rs2013387	0.88[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs28578576	1.00[TSI][hapmap]
rs28767926	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4354572	1.00[GIH][hapmap]
rs4916221	1.00[GIH][hapmap]
rs58045923	0.82[AFR][1000 genomes]
rs59054917	0.82[AFR][1000 genomes]
rs6425251	0.88[ASW][hapmap];0.88[LWK][hapmap]
rs6425257	1.00[EUR][1000 genomes]
rs6658217	0.83[EUR][1000 genomes]
rs6663880	1.00[EUR][1000 genomes]
rs6666475	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6668650	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6675955	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6677292	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6678784	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs6682615	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6690869	0.82[AMR][1000 genomes]
rs6692452	1.00[TSI][hapmap]
rs6700712	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6702485	1.00[EUR][1000 genomes]
rs727925	0.96[AMR][1000 genomes]
rs73033123	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7518601	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7536773	1.00[TSI][hapmap]
rs7544583	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7550036	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7552840	1.00[TSI][hapmap]
rs9286887	1.00[TSI][hapmap]
rs9286890	1.00[TSI][hapmap]
rs9425415	1.00[TSI][hapmap]
rs9425752	1.00[TSI][hapmap]
rs9803675	0.82[AMR][1000 genomes]
rs9803677	0.82[AMR][1000 genomes]
rs9970633	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415007	chr1:173606736-173611929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173606800-173607800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr1:173606800-173608000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173606800-173609600	Active TSS	H1 Cell Line	embryonic stem cell
4	chr1:173606800-173611400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr1:173607000-173607800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr1:173607000-173607800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr1:173607000-173607800	Enhancers	Right Atrium	heart
8	chr1:173607000-173609200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:173607200-173607800	Enhancers	Pancreas	Pancrea
10	chr1:173607400-173607800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:173607400-173608400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:173607400-173608600	Enhancers	K562	blood
13	chr1:173607400-173609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:173607400-173624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:173607600-173609000	Active TSS	H9 Cell Line	embryonic stem cell

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