The 2.0 version of rSNPBase

Variant report

Variant rs6702485
Chromosome Location chr1:173722164-173722165
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173685200-173724600 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:173685400-173725000 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr1:173685800-173724800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:173686800-173725400 Weak transcription Right Ventricle heart
5 chr1:173694600-173724800 Weak transcription HMEC breast
6 chr1:173695400-173726000 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:173695800-173725000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:173695800-173726000 Weak transcription Esophagus oesophagus
9 chr1:173695800-173729800 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:173696200-173726000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:173696600-173723000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:173698000-173724800 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr1:173699600-173725800 Weak transcription Fetal Kidney kidney
14 chr1:173703400-173725000 Weak transcription Colonic Mucosa Colon
15 chr1:173703400-173725000 Weak transcription Psoas Muscle Psoas
16 chr1:173703400-173726000 Weak transcription Aorta Aorta
17 chr1:173703400-173726000 Weak transcription Spleen Spleen
18 chr1:173703400-173726000 Weak transcription NHEK skin
19 chr1:173703600-173724400 Weak transcription Brain Substantia Nigra brain
20 chr1:173703600-173724400 Weak transcription GM12878-XiMat blood
21 chr1:173703600-173724400 Weak transcription HSMMtube muscle
22 chr1:173703600-173724800 Weak transcription Pancreas Pancrea
23 chr1:173703800-173728200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:173704200-173722200 Weak transcription Osteobl bone
25 chr1:173704200-173725000 Weak transcription NHLF lung
26 chr1:173704400-173722200 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr1:173704400-173724400 Weak transcription Gastric stomach
28 chr1:173704400-173725000 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:173704400-173725200 Weak transcription H1 Cell Line embryonic stem cell
30 chr1:173705000-173723600 Weak transcription Lung lung
31 chr1:173705400-173724800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:173705600-173724800 Weak transcription Brain Angular Gyrus brain
33 chr1:173705800-173725400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:173706400-173722600 Weak transcription HepG2 liver
35 chr1:173707600-173722600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:173710200-173726000 Weak transcription Brain Germinal Matrix brain
37 chr1:173711600-173722200 Weak transcription Primary hematopoietic stem cells blood
38 chr1:173711600-173724800 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:173711800-173724000 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:173713400-173731600 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:173718600-173725000 Weak transcription NHDF-Ad bronchial
42 chr1:173718800-173725800 Weak transcription A549 lung
43 chr1:173719200-173724800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:173719400-173722800 Strong transcription Fetal Stomach stomach
45 chr1:173719600-173722800 Strong transcription Fetal Intestine Large intestine
46 chr1:173720000-173722800 Strong transcription Left Ventricle heart
47 chr1:173720000-173724800 Weak transcription Fetal Brain Male brain
48 chr1:173720000-173730000 Strong transcription Primary B cells from cord blood blood
49 chr1:173720000-173730600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:173720200-173722800 Strong transcription K562 blood

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Last update: Aug 31, 2015