The 2.0 version of rSNPBase

Variant report

Variant rs9970488
Chromosome Location chr1:173791947-173791948
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173736600-173792400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:173745000-173792400 Weak transcription Psoas Muscle Psoas
3 chr1:173749200-173792600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:173751400-173792200 Weak transcription Fetal Kidney kidney
5 chr1:173753200-173792200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:173753200-173792800 Weak transcription Esophagus oesophagus
7 chr1:173753400-173792600 Weak transcription Spleen Spleen
8 chr1:173753400-173792800 Weak transcription Gastric stomach
9 chr1:173753400-173792800 Weak transcription Pancreas Pancrea
10 chr1:173753600-173792600 Weak transcription Brain Cingulate Gyrus brain
11 chr1:173754200-173792200 Weak transcription Fetal Brain Female brain
12 chr1:173754400-173792600 Weak transcription Brain Hippocampus Middle brain
13 chr1:173755400-173792200 Weak transcription HSMMtube muscle
14 chr1:173755400-173792600 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:173758800-173792200 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:173761000-173792200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:173770000-173792000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:173772600-173792200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:173775400-173792400 Weak transcription Brain Anterior Caudate brain
20 chr1:173775600-173792200 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr1:173775600-173792200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:173775800-173792000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:173775800-173792800 Weak transcription Ovary ovary
24 chr1:173776000-173792400 Weak transcription H9 Cell Line embryonic stem cell
25 chr1:173776000-173792400 Weak transcription Fetal Intestine Large intestine
26 chr1:173776000-173792800 Weak transcription Left Ventricle heart
27 chr1:173776800-173792200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:173779200-173792200 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:173779400-173792000 Weak transcription Primary T cells fromperipheralblood blood
30 chr1:173779600-173792200 Weak transcription Primary hematopoietic stem cells blood
31 chr1:173779600-173792200 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr1:173779600-173792600 Weak transcription Adipose Nuclei Adipose
33 chr1:173779800-173792200 Weak transcription Duodenum Mucosa Duodenum
34 chr1:173780000-173792000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:173780000-173792200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr1:173780400-173792200 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr1:173780400-173792200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr1:173780400-173792600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:173780600-173792000 Weak transcription Fetal Muscle Trunk muscle
40 chr1:173780600-173792200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:173781200-173792200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:173781200-173792200 Weak transcription Fetal Intestine Small intestine
43 chr1:173786600-173792200 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:173787400-173792600 Weak transcription Right Atrium heart
45 chr1:173787800-173792200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:173788000-173792200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:173788000-173792400 Weak transcription Primary B cells from peripheral blood blood
48 chr1:173788000-173792400 Weak transcription Placenta Amnion Placenta Amnion
49 chr1:173788000-173792400 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr1:173788000-173792400 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015