Variant report

Variant	rs10737302
Chromosome Location	chr1:173410936-173410937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173409411..173411609-chr1:173835982..173838430,2	K562	blood:

Variant related genes	Relation type
ENSG00000185278	Chromatin interaction
ENSG00000234741	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10157668	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10158034	1.00[GIH][hapmap]
rs10732994	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059068	1.00[GIH][hapmap]
rs12065033	1.00[GIH][hapmap]
rs12081220	1.00[GIH][hapmap]
rs12087885	1.00[GIH][hapmap]
rs16828416	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16846025	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846029	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846052	1.00[GIH][hapmap]
rs16846055	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846090	1.00[AMR][1000 genomes]
rs16846099	1.00[AMR][1000 genomes]
rs16846103	1.00[AMR][1000 genomes]
rs16846122	1.00[AMR][1000 genomes]
rs16846125	1.00[AMR][1000 genomes]
rs16846129	1.00[AMR][1000 genomes]
rs16846173	0.87[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16846204	1.00[AMR][1000 genomes]
rs16846220	1.00[GIH][hapmap]
rs16846301	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2013387	1.00[GIH][hapmap]
rs35581908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4342885	0.93[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4354572	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4494170	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs4551627	0.89[AFR][1000 genomes]
rs4567310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4636504	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4916221	1.00[GIH][hapmap]
rs56043618	1.00[AMR][1000 genomes]
rs56236728	0.87[AMR][1000 genomes]
rs59041016	1.00[AMR][1000 genomes]
rs60055251	0.87[AMR][1000 genomes]
rs60769229	0.87[AMR][1000 genomes]
rs6425234	0.94[YRI][hapmap]
rs6663036	0.87[AMR][1000 genomes]
rs6678784	1.00[GIH][hapmap]
rs7513591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7513763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425722	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9425725	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs9425727	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173376200-173429000	Weak transcription	Gastric	stomach
2	chr1:173387600-173429000	Weak transcription	Lung	lung
3	chr1:173391800-173429000	Weak transcription	Ovary	ovary
4	chr1:173399400-173414400	Weak transcription	Spleen	Spleen
5	chr1:173399400-173424200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:173399600-173412800	Weak transcription	Thymus	Thymus
7	chr1:173399800-173413000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:173399800-173413800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:173399800-173415400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:173399800-173415600	Weak transcription	Liver	Liver
11	chr1:173400200-173421000	Weak transcription	Psoas Muscle	Psoas
12	chr1:173400200-173422800	Weak transcription	NH-A	brain
13	chr1:173400400-173429000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:173400600-173413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:173400600-173413600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:173400600-173413800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:173400600-173428800	Weak transcription	Fetal Stomach	stomach
18	chr1:173400800-173411200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:173400800-173412600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:173400800-173413400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:173400800-173413800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:173400800-173413800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:173400800-173413800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:173400800-173413800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr1:173400800-173414000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:173400800-173414200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:173400800-173420600	Weak transcription	Hela-S3	cervix
28	chr1:173400800-173421000	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:173400800-173422800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:173400800-173429000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:173400800-173429000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:173401000-173415600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:173401000-173418000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:173401000-173421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:173401000-173421000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:173401000-173422800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:173401000-173428800	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:173401000-173429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:173401000-173429000	Weak transcription	Left Ventricle	heart
40	chr1:173401200-173413200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:173401200-173413200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr1:173401200-173422800	Weak transcription	HSMM	muscle
43	chr1:173401400-173412800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:173401800-173429000	Weak transcription	Primary B cells from cord blood	blood
45	chr1:173404200-173429000	Weak transcription	Adipose Nuclei	Adipose
46	chr1:173404200-173429000	Weak transcription	Right Ventricle	heart
47	chr1:173404400-173423000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:173406200-173413200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:173407400-173411400	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:173407800-173411600	Strong transcription	Primary T cells from cord blood	blood

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